Hb_164926_040

Information

Type -
Description -
Location Contig164926: 29690-34932
Sequence    

Annotation

kegg
ID rcu:RCOM_1314290
description Beta-1,3-galactosyltransferase sqv-2, putative (EC:2.4.1.134)
nr
ID XP_002518935.1
description Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
swissprot
ID Q9MAP8
description Probable beta-1,3-galactosyltransferase 6 OS=Arabidopsis thaliana GN=B3GALT6 PE=2 SV=1
trembl
ID B9RYW6
description Beta-1,3-galactosyltransferase sqv-2, putative OS=Ricinus communis GN=RCOM_1314290 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15170: 29819-34898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164926_040 0.0 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
2 Hb_003972_060 0.1202364093 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
3 Hb_000165_200 0.1268739241 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_001472_110 0.1352554381 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
5 Hb_002301_110 0.1443342472 - - PREDICTED: protein E6-like [Populus euphratica]
6 Hb_000186_290 0.147897465 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
7 Hb_008695_150 0.1553663805 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
8 Hb_002739_040 0.156526977 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
9 Hb_004545_070 0.1586194345 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
10 Hb_009767_050 0.1594570433 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
11 Hb_001252_070 0.159871466 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
12 Hb_002072_040 0.1613698572 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
13 Hb_003562_030 0.1624038027 - - -
14 Hb_002339_030 0.1663888011 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_007044_220 0.1684035959 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
16 Hb_000834_040 0.1695905392 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
17 Hb_021409_140 0.1751332414 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
18 Hb_042509_020 0.1762791855 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
19 Hb_007138_030 0.1822237334 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
20 Hb_005839_030 0.1837845273 - - PREDICTED: potassium transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_164926_040 Hb_164926_040 Hb_003972_060 Hb_003972_060 Hb_164926_040--Hb_003972_060 Hb_000165_200 Hb_000165_200 Hb_164926_040--Hb_000165_200 Hb_001472_110 Hb_001472_110 Hb_164926_040--Hb_001472_110 Hb_002301_110 Hb_002301_110 Hb_164926_040--Hb_002301_110 Hb_000186_290 Hb_000186_290 Hb_164926_040--Hb_000186_290 Hb_008695_150 Hb_008695_150 Hb_164926_040--Hb_008695_150 Hb_000139_140 Hb_000139_140 Hb_003972_060--Hb_000139_140 Hb_003972_060--Hb_000165_200 Hb_004330_080 Hb_004330_080 Hb_003972_060--Hb_004330_080 Hb_000220_110 Hb_000220_110 Hb_003972_060--Hb_000220_110 Hb_002518_090 Hb_002518_090 Hb_003972_060--Hb_002518_090 Hb_000165_200--Hb_001472_110 Hb_004545_070 Hb_004545_070 Hb_000165_200--Hb_004545_070 Hb_000165_200--Hb_002301_110 Hb_002339_030 Hb_002339_030 Hb_000165_200--Hb_002339_030 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_001472_110--Hb_002301_110 Hb_001472_110--Hb_002339_030 Hb_003562_030 Hb_003562_030 Hb_001472_110--Hb_003562_030 Hb_002072_040 Hb_002072_040 Hb_001472_110--Hb_002072_040 Hb_001047_170 Hb_001047_170 Hb_002301_110--Hb_001047_170 Hb_002301_110--Hb_002072_040 Hb_002301_110--Hb_002339_030 Hb_078081_010 Hb_078081_010 Hb_000186_290--Hb_078081_010 Hb_002739_040 Hb_002739_040 Hb_000186_290--Hb_002739_040 Hb_000116_120 Hb_000116_120 Hb_000186_290--Hb_000116_120 Hb_004346_010 Hb_004346_010 Hb_000186_290--Hb_004346_010 Hb_021409_140 Hb_021409_140 Hb_000186_290--Hb_021409_140 Hb_000042_380 Hb_000042_380 Hb_008695_150--Hb_000042_380 Hb_005485_070 Hb_005485_070 Hb_008695_150--Hb_005485_070 Hb_005333_080 Hb_005333_080 Hb_008695_150--Hb_005333_080 Hb_000116_240 Hb_000116_240 Hb_008695_150--Hb_000116_240 Hb_001439_010 Hb_001439_010 Hb_008695_150--Hb_001439_010 Hb_000731_210 Hb_000731_210 Hb_008695_150--Hb_000731_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.404196 1.55063 5.52211 9.7768 0.1757 0.174074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.471783 0.672753 1.13532 12.1871 2.38291

CAGE analysis