Hb_000186_290

Information

Type -
Description -
Location Contig186: 336252-343481
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002088mg
description hypothetical protein
nr
ID XP_012091293.1
description PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
swissprot
ID Q6R2J8
description Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1
trembl
ID A0A067JDA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21174 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein strubbelig-receptor family 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18250: 336684-337619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_290 0.0 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
2 Hb_078081_010 0.1165124085 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
3 Hb_002739_040 0.1359701786 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
4 Hb_164926_040 0.147897465 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
5 Hb_000116_120 0.1514111332 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
6 Hb_004346_010 0.1516643348 - - conserved hypothetical protein [Ricinus communis]
7 Hb_021409_140 0.1577014419 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
8 Hb_172426_050 0.1578164187 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
9 Hb_004324_030 0.1626323566 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
10 Hb_006501_100 0.166254755 - - malic enzyme, putative [Ricinus communis]
11 Hb_009545_030 0.1695313056 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
12 Hb_009767_050 0.1756480666 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
13 Hb_001040_200 0.1762257327 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
14 Hb_042509_020 0.1784658636 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
15 Hb_007138_030 0.1801074244 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
16 Hb_000834_040 0.1833624945 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
17 Hb_004545_070 0.1833656711 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
18 Hb_004282_010 0.1848051903 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
19 Hb_000165_200 0.1850253766 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_008143_040 0.1851511857 - - Alpha-expansin 4 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000186_290 Hb_000186_290 Hb_078081_010 Hb_078081_010 Hb_000186_290--Hb_078081_010 Hb_002739_040 Hb_002739_040 Hb_000186_290--Hb_002739_040 Hb_164926_040 Hb_164926_040 Hb_000186_290--Hb_164926_040 Hb_000116_120 Hb_000116_120 Hb_000186_290--Hb_000116_120 Hb_004346_010 Hb_004346_010 Hb_000186_290--Hb_004346_010 Hb_021409_140 Hb_021409_140 Hb_000186_290--Hb_021409_140 Hb_078081_010--Hb_002739_040 Hb_001040_200 Hb_001040_200 Hb_078081_010--Hb_001040_200 Hb_000834_040 Hb_000834_040 Hb_078081_010--Hb_000834_040 Hb_002307_010 Hb_002307_010 Hb_078081_010--Hb_002307_010 Hb_001663_120 Hb_001663_120 Hb_078081_010--Hb_001663_120 Hb_000003_020 Hb_000003_020 Hb_002739_040--Hb_000003_020 Hb_004324_030 Hb_004324_030 Hb_002739_040--Hb_004324_030 Hb_003142_060 Hb_003142_060 Hb_002739_040--Hb_003142_060 Hb_004079_100 Hb_004079_100 Hb_002739_040--Hb_004079_100 Hb_026549_050 Hb_026549_050 Hb_002739_040--Hb_026549_050 Hb_002739_040--Hb_000834_040 Hb_003972_060 Hb_003972_060 Hb_164926_040--Hb_003972_060 Hb_000165_200 Hb_000165_200 Hb_164926_040--Hb_000165_200 Hb_001472_110 Hb_001472_110 Hb_164926_040--Hb_001472_110 Hb_002301_110 Hb_002301_110 Hb_164926_040--Hb_002301_110 Hb_008695_150 Hb_008695_150 Hb_164926_040--Hb_008695_150 Hb_003086_010 Hb_003086_010 Hb_000116_120--Hb_003086_010 Hb_000116_120--Hb_078081_010 Hb_000116_120--Hb_021409_140 Hb_000653_010 Hb_000653_010 Hb_000116_120--Hb_000653_010 Hb_001474_010 Hb_001474_010 Hb_000116_120--Hb_001474_010 Hb_001916_030 Hb_001916_030 Hb_004346_010--Hb_001916_030 Hb_004545_070 Hb_004545_070 Hb_004346_010--Hb_004545_070 Hb_007885_020 Hb_007885_020 Hb_004346_010--Hb_007885_020 Hb_009545_030 Hb_009545_030 Hb_004346_010--Hb_009545_030 Hb_004346_010--Hb_078081_010 Hb_000707_010 Hb_000707_010 Hb_021409_140--Hb_000707_010 Hb_000720_090 Hb_000720_090 Hb_021409_140--Hb_000720_090 Hb_021409_140--Hb_003086_010 Hb_172426_050 Hb_172426_050 Hb_021409_140--Hb_172426_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.396472 1.17415 3.17705 10.0913 0.0738018 0.241859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.763038 0.722984 0.093655 12.2187 3.499

CAGE analysis