Hb_001663_120

Information

Type -
Description -
Location Contig1663: 86818-91639
Sequence    

Annotation

kegg
ID rcu:RCOM_0101400
description hypothetical protein
nr
ID XP_012084401.1
description PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SE97
description Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1
trembl
ID A0A067LKH0
description Formin-like protein OS=Jatropha curcas GN=JCGZ_15060 PE=3 SV=1
Gene Ontology
ID GO:0016043
description formin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15361: 88841-90770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001663_120 0.0 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
2 Hb_001564_090 0.0869622495 - - conserved hypothetical protein [Ricinus communis]
3 Hb_029866_080 0.1242501651 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
4 Hb_085315_010 0.1327351949 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
5 Hb_004462_040 0.1357258681 - - unnamed protein product [Vitis vinifera]
6 Hb_164117_010 0.1413024996 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
7 Hb_005333_120 0.1426843636 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
8 Hb_012787_050 0.1456042506 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
9 Hb_000127_080 0.1506023049 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
10 Hb_170193_030 0.1509382523 - - PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
11 Hb_078081_010 0.1538943275 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
12 Hb_002333_010 0.1553340196 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
13 Hb_008727_040 0.1554423677 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002042_160 0.1558030801 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_006846_030 0.1561283638 - - respiratory burst oxidase A [Manihot esculenta]
16 Hb_004785_090 0.156720511 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
17 Hb_078361_010 0.1603082229 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
18 Hb_007632_130 0.1619555126 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
19 Hb_135720_010 0.1621956727 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
20 Hb_032260_130 0.1625856765 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]

Gene co-expression network

sample Hb_001663_120 Hb_001663_120 Hb_001564_090 Hb_001564_090 Hb_001663_120--Hb_001564_090 Hb_029866_080 Hb_029866_080 Hb_001663_120--Hb_029866_080 Hb_085315_010 Hb_085315_010 Hb_001663_120--Hb_085315_010 Hb_004462_040 Hb_004462_040 Hb_001663_120--Hb_004462_040 Hb_164117_010 Hb_164117_010 Hb_001663_120--Hb_164117_010 Hb_005333_120 Hb_005333_120 Hb_001663_120--Hb_005333_120 Hb_001564_090--Hb_029866_080 Hb_001564_090--Hb_005333_120 Hb_012787_050 Hb_012787_050 Hb_001564_090--Hb_012787_050 Hb_001564_090--Hb_004462_040 Hb_001799_090 Hb_001799_090 Hb_001564_090--Hb_001799_090 Hb_002289_110 Hb_002289_110 Hb_029866_080--Hb_002289_110 Hb_029866_080--Hb_012787_050 Hb_000070_070 Hb_000070_070 Hb_029866_080--Hb_000070_070 Hb_005489_120 Hb_005489_120 Hb_029866_080--Hb_005489_120 Hb_029866_080--Hb_005333_120 Hb_085315_010--Hb_164117_010 Hb_008727_040 Hb_008727_040 Hb_085315_010--Hb_008727_040 Hb_006846_030 Hb_006846_030 Hb_085315_010--Hb_006846_030 Hb_085315_010--Hb_012787_050 Hb_004893_010 Hb_004893_010 Hb_085315_010--Hb_004893_010 Hb_000127_080 Hb_000127_080 Hb_085315_010--Hb_000127_080 Hb_004462_040--Hb_005333_120 Hb_003435_070 Hb_003435_070 Hb_004462_040--Hb_003435_070 Hb_135811_040 Hb_135811_040 Hb_004462_040--Hb_135811_040 Hb_001053_110 Hb_001053_110 Hb_004462_040--Hb_001053_110 Hb_118707_020 Hb_118707_020 Hb_004462_040--Hb_118707_020 Hb_032260_130 Hb_032260_130 Hb_164117_010--Hb_032260_130 Hb_164117_010--Hb_004893_010 Hb_116194_010 Hb_116194_010 Hb_164117_010--Hb_116194_010 Hb_019026_050 Hb_019026_050 Hb_164117_010--Hb_019026_050 Hb_164117_010--Hb_000127_080 Hb_005333_120--Hb_003435_070 Hb_005333_120--Hb_001053_110 Hb_000417_350 Hb_000417_350 Hb_005333_120--Hb_000417_350 Hb_002333_010 Hb_002333_010 Hb_005333_120--Hb_002333_010 Hb_001856_150 Hb_001856_150 Hb_005333_120--Hb_001856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221316 4.30645 2.34257 14.4443 1.09834 0.231395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0360726 0.0094625 0.0362999 13.9146 4.4345

CAGE analysis