Hb_008727_040

Information

Type -
Description -
Location Contig8727: 35806-36159
Sequence    

Annotation

kegg
ID rcu:RCOM_0175590
description hypothetical protein
nr
ID XP_002527514.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61212: 35599-36235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008727_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004282_010 0.0874526992 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
3 Hb_012787_050 0.0905573861 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
4 Hb_001568_010 0.0909403767 - - conserved hypothetical protein [Ricinus communis]
5 Hb_085315_010 0.1022185687 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
6 Hb_000956_070 0.106964278 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
7 Hb_006846_030 0.1082096556 - - respiratory burst oxidase A [Manihot esculenta]
8 Hb_003964_060 0.1118118547 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
9 Hb_000070_070 0.1128799067 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
10 Hb_023956_010 0.1148323403 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_006501_100 0.120838869 - - malic enzyme, putative [Ricinus communis]
12 Hb_000014_080 0.1211913324 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
13 Hb_002333_010 0.1255792412 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
14 Hb_000127_080 0.1264970173 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
15 Hb_019026_050 0.1266250231 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000749_160 0.1269085873 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_164117_010 0.1280675471 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
18 Hb_005333_120 0.1341456934 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
19 Hb_029866_080 0.1346778325 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
20 Hb_003847_050 0.1348733202 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_008727_040 Hb_008727_040 Hb_004282_010 Hb_004282_010 Hb_008727_040--Hb_004282_010 Hb_012787_050 Hb_012787_050 Hb_008727_040--Hb_012787_050 Hb_001568_010 Hb_001568_010 Hb_008727_040--Hb_001568_010 Hb_085315_010 Hb_085315_010 Hb_008727_040--Hb_085315_010 Hb_000956_070 Hb_000956_070 Hb_008727_040--Hb_000956_070 Hb_006846_030 Hb_006846_030 Hb_008727_040--Hb_006846_030 Hb_004282_010--Hb_000956_070 Hb_006501_100 Hb_006501_100 Hb_004282_010--Hb_006501_100 Hb_000014_080 Hb_000014_080 Hb_004282_010--Hb_000014_080 Hb_004282_010--Hb_001568_010 Hb_006277_030 Hb_006277_030 Hb_004282_010--Hb_006277_030 Hb_012787_050--Hb_006846_030 Hb_000070_070 Hb_000070_070 Hb_012787_050--Hb_000070_070 Hb_023956_010 Hb_023956_010 Hb_012787_050--Hb_023956_010 Hb_002333_010 Hb_002333_010 Hb_012787_050--Hb_002333_010 Hb_003847_050 Hb_003847_050 Hb_012787_050--Hb_003847_050 Hb_001568_010--Hb_006846_030 Hb_001568_010--Hb_003847_050 Hb_001568_010--Hb_012787_050 Hb_001568_010--Hb_000014_080 Hb_164117_010 Hb_164117_010 Hb_085315_010--Hb_164117_010 Hb_085315_010--Hb_006846_030 Hb_085315_010--Hb_012787_050 Hb_004893_010 Hb_004893_010 Hb_085315_010--Hb_004893_010 Hb_000127_080 Hb_000127_080 Hb_085315_010--Hb_000127_080 Hb_000956_070--Hb_006501_100 Hb_000956_070--Hb_000014_080 Hb_000956_070--Hb_000127_080 Hb_002818_170 Hb_002818_170 Hb_000956_070--Hb_002818_170 Hb_006846_030--Hb_003847_050 Hb_006846_030--Hb_023956_010 Hb_002448_020 Hb_002448_020 Hb_006846_030--Hb_002448_020 Hb_019026_050 Hb_019026_050 Hb_006846_030--Hb_019026_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107039 1.97264 2.2789 10.8806 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.32627 2.35426

CAGE analysis