Hb_001564_090

Information

Type -
Description -
Location Contig1564: 115509-116264
Sequence    

Annotation

kegg
ID rcu:RCOM_1618470
description hypothetical protein
nr
ID XP_002511997.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9RE58
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1618470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13594: 115529-115666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001564_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001663_120 0.0869622495 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
3 Hb_029866_080 0.0939814103 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
4 Hb_005333_120 0.1134969429 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
5 Hb_012787_050 0.1278489545 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
6 Hb_004462_040 0.1318203966 - - unnamed protein product [Vitis vinifera]
7 Hb_001799_090 0.1361508621 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
8 Hb_005489_120 0.1413349045 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
9 Hb_135720_010 0.1432144607 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
10 Hb_029977_010 0.1436726122 - - catalytic, putative [Ricinus communis]
11 Hb_085315_010 0.144924753 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
12 Hb_003967_010 0.146704495 - - cytochrome P450, putative [Ricinus communis]
13 Hb_000070_070 0.1500167817 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
14 Hb_002333_010 0.1501854978 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
15 Hb_008727_040 0.1503546663 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002042_160 0.1539953065 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_007632_130 0.1543948407 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
18 Hb_002289_110 0.1550885109 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
19 Hb_006846_030 0.1565924626 - - respiratory burst oxidase A [Manihot esculenta]
20 Hb_003964_060 0.1569078854 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]

Gene co-expression network

sample Hb_001564_090 Hb_001564_090 Hb_001663_120 Hb_001663_120 Hb_001564_090--Hb_001663_120 Hb_029866_080 Hb_029866_080 Hb_001564_090--Hb_029866_080 Hb_005333_120 Hb_005333_120 Hb_001564_090--Hb_005333_120 Hb_012787_050 Hb_012787_050 Hb_001564_090--Hb_012787_050 Hb_004462_040 Hb_004462_040 Hb_001564_090--Hb_004462_040 Hb_001799_090 Hb_001799_090 Hb_001564_090--Hb_001799_090 Hb_001663_120--Hb_029866_080 Hb_085315_010 Hb_085315_010 Hb_001663_120--Hb_085315_010 Hb_001663_120--Hb_004462_040 Hb_164117_010 Hb_164117_010 Hb_001663_120--Hb_164117_010 Hb_001663_120--Hb_005333_120 Hb_002289_110 Hb_002289_110 Hb_029866_080--Hb_002289_110 Hb_029866_080--Hb_012787_050 Hb_000070_070 Hb_000070_070 Hb_029866_080--Hb_000070_070 Hb_005489_120 Hb_005489_120 Hb_029866_080--Hb_005489_120 Hb_029866_080--Hb_005333_120 Hb_005333_120--Hb_004462_040 Hb_003435_070 Hb_003435_070 Hb_005333_120--Hb_003435_070 Hb_001053_110 Hb_001053_110 Hb_005333_120--Hb_001053_110 Hb_000417_350 Hb_000417_350 Hb_005333_120--Hb_000417_350 Hb_002333_010 Hb_002333_010 Hb_005333_120--Hb_002333_010 Hb_001856_150 Hb_001856_150 Hb_005333_120--Hb_001856_150 Hb_006846_030 Hb_006846_030 Hb_012787_050--Hb_006846_030 Hb_012787_050--Hb_000070_070 Hb_023956_010 Hb_023956_010 Hb_012787_050--Hb_023956_010 Hb_012787_050--Hb_002333_010 Hb_003847_050 Hb_003847_050 Hb_012787_050--Hb_003847_050 Hb_008727_040 Hb_008727_040 Hb_012787_050--Hb_008727_040 Hb_004462_040--Hb_003435_070 Hb_135811_040 Hb_135811_040 Hb_004462_040--Hb_135811_040 Hb_004462_040--Hb_001053_110 Hb_118707_020 Hb_118707_020 Hb_004462_040--Hb_118707_020 Hb_001799_090--Hb_002289_110 Hb_001998_260 Hb_001998_260 Hb_001799_090--Hb_001998_260 Hb_001856_160 Hb_001856_160 Hb_001799_090--Hb_001856_160 Hb_028008_030 Hb_028008_030 Hb_001799_090--Hb_028008_030 Hb_000069_520 Hb_000069_520 Hb_001799_090--Hb_000069_520 Hb_001799_090--Hb_005489_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0631875 2.17018 1.01444 7.03555 0.241327 0.185811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0727991 0.0572372 0 6.33773 1.37063

CAGE analysis