Hb_004462_040

Information

Type -
Description -
Location Contig4462: 59922-61955
Sequence    

Annotation

kegg
ID cit:102628818
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like
nr
ID CBI26234.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID K7L9Y9
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43036: 60713-61018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004462_040 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_005333_120 0.0808482501 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
3 Hb_003435_070 0.1056586525 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
4 Hb_135811_040 0.1258988871 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001053_110 0.1261322359 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
6 Hb_118707_020 0.1284847231 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001564_090 0.1318203966 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002333_010 0.1321481341 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
9 Hb_001856_150 0.1324906465 - - -
10 Hb_000967_010 0.1340699011 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
11 Hb_028008_030 0.1352907955 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
12 Hb_001663_120 0.1357258681 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
13 Hb_000230_160 0.1383672289 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
14 Hb_003805_080 0.139582336 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
15 Hb_000417_350 0.1413907678 - - conserved hypothetical protein [Ricinus communis]
16 Hb_188923_010 0.143371593 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_150084_010 0.1437424846 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
18 Hb_003058_180 0.1450881873 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
19 Hb_000172_740 0.1462327669 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
20 Hb_001470_040 0.1464296152 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004462_040 Hb_004462_040 Hb_005333_120 Hb_005333_120 Hb_004462_040--Hb_005333_120 Hb_003435_070 Hb_003435_070 Hb_004462_040--Hb_003435_070 Hb_135811_040 Hb_135811_040 Hb_004462_040--Hb_135811_040 Hb_001053_110 Hb_001053_110 Hb_004462_040--Hb_001053_110 Hb_118707_020 Hb_118707_020 Hb_004462_040--Hb_118707_020 Hb_001564_090 Hb_001564_090 Hb_004462_040--Hb_001564_090 Hb_005333_120--Hb_003435_070 Hb_005333_120--Hb_001053_110 Hb_000417_350 Hb_000417_350 Hb_005333_120--Hb_000417_350 Hb_002333_010 Hb_002333_010 Hb_005333_120--Hb_002333_010 Hb_001856_150 Hb_001856_150 Hb_005333_120--Hb_001856_150 Hb_000967_010 Hb_000967_010 Hb_003435_070--Hb_000967_010 Hb_003435_070--Hb_001856_150 Hb_003435_070--Hb_118707_020 Hb_003058_180 Hb_003058_180 Hb_003435_070--Hb_003058_180 Hb_008727_030 Hb_008727_030 Hb_003435_070--Hb_008727_030 Hb_135811_040--Hb_118707_020 Hb_135811_040--Hb_000967_010 Hb_188923_010 Hb_188923_010 Hb_135811_040--Hb_188923_010 Hb_002016_020 Hb_002016_020 Hb_135811_040--Hb_002016_020 Hb_135811_040--Hb_003058_180 Hb_000032_560 Hb_000032_560 Hb_135811_040--Hb_000032_560 Hb_129637_010 Hb_129637_010 Hb_001053_110--Hb_129637_010 Hb_000300_170 Hb_000300_170 Hb_001053_110--Hb_000300_170 Hb_005489_120 Hb_005489_120 Hb_001053_110--Hb_005489_120 Hb_001053_110--Hb_000417_350 Hb_001369_620 Hb_001369_620 Hb_001053_110--Hb_001369_620 Hb_118707_020--Hb_000967_010 Hb_118707_020--Hb_008727_030 Hb_118707_020--Hb_188923_010 Hb_000380_210 Hb_000380_210 Hb_118707_020--Hb_000380_210 Hb_001663_120 Hb_001663_120 Hb_001564_090--Hb_001663_120 Hb_029866_080 Hb_029866_080 Hb_001564_090--Hb_029866_080 Hb_001564_090--Hb_005333_120 Hb_012787_050 Hb_012787_050 Hb_001564_090--Hb_012787_050 Hb_001799_090 Hb_001799_090 Hb_001564_090--Hb_001799_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0101086 0.960613 0.437346 3.42673 0.209514 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.34483 0.496437

CAGE analysis