Hb_116194_010

Information

Type -
Description -
Location Contig116194: 1-1278
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05003: 53-394 , PASA_asmbl_05004: 834-958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116194_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_032260_130 0.1011181404 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
3 Hb_000115_290 0.1047452727 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
4 Hb_164117_010 0.112403024 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
5 Hb_002042_160 0.129463647 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_002814_050 0.1322604203 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
7 Hb_004785_090 0.1368591605 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
8 Hb_085315_010 0.1387886755 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
9 Hb_007632_130 0.1425009004 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
10 Hb_004893_010 0.1448806634 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
11 Hb_000994_100 0.1482118892 - - RALFL33, putative [Ricinus communis]
12 Hb_020805_190 0.1486869043 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
13 Hb_078361_010 0.1514824722 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
14 Hb_000011_320 0.1528775362 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
15 Hb_004657_080 0.153044597 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
16 Hb_001728_130 0.1532144119 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_000705_050 0.1535202092 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
18 Hb_000095_070 0.1546717592 - - conserved hypothetical protein [Ricinus communis]
19 Hb_135720_010 0.1567836803 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
20 Hb_002374_520 0.1577055155 - - early nodulin 8 precursor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_116194_010 Hb_116194_010 Hb_032260_130 Hb_032260_130 Hb_116194_010--Hb_032260_130 Hb_000115_290 Hb_000115_290 Hb_116194_010--Hb_000115_290 Hb_164117_010 Hb_164117_010 Hb_116194_010--Hb_164117_010 Hb_002042_160 Hb_002042_160 Hb_116194_010--Hb_002042_160 Hb_002814_050 Hb_002814_050 Hb_116194_010--Hb_002814_050 Hb_004785_090 Hb_004785_090 Hb_116194_010--Hb_004785_090 Hb_032260_130--Hb_164117_010 Hb_004893_010 Hb_004893_010 Hb_032260_130--Hb_004893_010 Hb_032260_130--Hb_000115_290 Hb_007632_130 Hb_007632_130 Hb_032260_130--Hb_007632_130 Hb_002374_520 Hb_002374_520 Hb_032260_130--Hb_002374_520 Hb_010417_090 Hb_010417_090 Hb_000115_290--Hb_010417_090 Hb_000994_100 Hb_000994_100 Hb_000115_290--Hb_000994_100 Hb_002970_070 Hb_002970_070 Hb_000115_290--Hb_002970_070 Hb_000115_290--Hb_002374_520 Hb_085315_010 Hb_085315_010 Hb_164117_010--Hb_085315_010 Hb_164117_010--Hb_004893_010 Hb_019026_050 Hb_019026_050 Hb_164117_010--Hb_019026_050 Hb_000127_080 Hb_000127_080 Hb_164117_010--Hb_000127_080 Hb_002042_160--Hb_000994_100 Hb_002042_160--Hb_002970_070 Hb_172633_020 Hb_172633_020 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_055529_010 Hb_055529_010 Hb_002042_160--Hb_055529_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_000095_070 Hb_000095_070 Hb_002814_050--Hb_000095_070 Hb_000347_420 Hb_000347_420 Hb_002814_050--Hb_000347_420 Hb_004307_070 Hb_004307_070 Hb_002814_050--Hb_004307_070 Hb_007943_020 Hb_007943_020 Hb_002814_050--Hb_007943_020 Hb_000970_020 Hb_000970_020 Hb_002814_050--Hb_000970_020 Hb_004785_090--Hb_164117_010 Hb_004785_090--Hb_085315_010 Hb_001430_090 Hb_001430_090 Hb_004785_090--Hb_001430_090 Hb_004785_090--Hb_000127_080 Hb_020805_190 Hb_020805_190 Hb_004785_090--Hb_020805_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0905752 2.3634 0.412785 7.56186 0.0154517 0.126152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0592236 0 4.97652 3.1975

CAGE analysis