Hb_020805_190

Information

Type transcription factor
Description TF Family: HB
Location Contig20805: 144132-145486
Sequence    

Annotation

kegg
ID rcu:RCOM_1601580
description DNA binding protein, putative
nr
ID XP_002510692.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q5QMM3
description WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1
trembl
ID B9R8P9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1601580 PE=4 SV=1
Gene Ontology
ID GO:0005634
description wuschel-related homeobox 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21539: 143935-144781 , PASA_asmbl_21540: 143935-144621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_190 0.0 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
2 Hb_001430_090 0.1422635899 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
3 Hb_116194_010 0.1486869043 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
4 Hb_004785_090 0.148844827 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
5 Hb_002042_160 0.1587963126 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_002900_040 0.1624199774 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
7 Hb_085315_010 0.1637109176 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
8 Hb_029977_010 0.1661205631 - - catalytic, putative [Ricinus communis]
9 Hb_184942_010 0.1682661018 - - STS14 protein precursor, putative [Ricinus communis]
10 Hb_001159_170 0.1688237071 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
11 Hb_004657_080 0.1699215406 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
12 Hb_001564_090 0.1756841746 - - conserved hypothetical protein [Ricinus communis]
13 Hb_150084_010 0.1770567263 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
14 Hb_000172_740 0.1803505624 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
15 Hb_172633_020 0.1807322574 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
16 Hb_001663_120 0.1838578708 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
17 Hb_002814_050 0.1845883102 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
18 Hb_001863_080 0.1901009875 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
19 Hb_164117_010 0.1923497243 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
20 Hb_003398_090 0.1948346123 - - PREDICTED: expansin-A4 [Jatropha curcas]

Gene co-expression network

sample Hb_020805_190 Hb_020805_190 Hb_001430_090 Hb_001430_090 Hb_020805_190--Hb_001430_090 Hb_116194_010 Hb_116194_010 Hb_020805_190--Hb_116194_010 Hb_004785_090 Hb_004785_090 Hb_020805_190--Hb_004785_090 Hb_002042_160 Hb_002042_160 Hb_020805_190--Hb_002042_160 Hb_002900_040 Hb_002900_040 Hb_020805_190--Hb_002900_040 Hb_085315_010 Hb_085315_010 Hb_020805_190--Hb_085315_010 Hb_003398_090 Hb_003398_090 Hb_001430_090--Hb_003398_090 Hb_001430_090--Hb_002900_040 Hb_000393_030 Hb_000393_030 Hb_001430_090--Hb_000393_030 Hb_003913_060 Hb_003913_060 Hb_001430_090--Hb_003913_060 Hb_000163_010 Hb_000163_010 Hb_001430_090--Hb_000163_010 Hb_130563_010 Hb_130563_010 Hb_001430_090--Hb_130563_010 Hb_032260_130 Hb_032260_130 Hb_116194_010--Hb_032260_130 Hb_000115_290 Hb_000115_290 Hb_116194_010--Hb_000115_290 Hb_164117_010 Hb_164117_010 Hb_116194_010--Hb_164117_010 Hb_116194_010--Hb_002042_160 Hb_002814_050 Hb_002814_050 Hb_116194_010--Hb_002814_050 Hb_116194_010--Hb_004785_090 Hb_004785_090--Hb_164117_010 Hb_004785_090--Hb_085315_010 Hb_004785_090--Hb_001430_090 Hb_000127_080 Hb_000127_080 Hb_004785_090--Hb_000127_080 Hb_000994_100 Hb_000994_100 Hb_002042_160--Hb_000994_100 Hb_002970_070 Hb_002970_070 Hb_002042_160--Hb_002970_070 Hb_172633_020 Hb_172633_020 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_055529_010 Hb_055529_010 Hb_002042_160--Hb_055529_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_000982_120 Hb_000982_120 Hb_002900_040--Hb_000982_120 Hb_002900_040--Hb_000163_010 Hb_031931_030 Hb_031931_030 Hb_002900_040--Hb_031931_030 Hb_002900_040--Hb_150084_010 Hb_001863_080 Hb_001863_080 Hb_002900_040--Hb_001863_080 Hb_085315_010--Hb_164117_010 Hb_008727_040 Hb_008727_040 Hb_085315_010--Hb_008727_040 Hb_006846_030 Hb_006846_030 Hb_085315_010--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_085315_010--Hb_012787_050 Hb_004893_010 Hb_004893_010 Hb_085315_010--Hb_004893_010 Hb_085315_010--Hb_000127_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.444658 5.25344 0.6269 17.6032 0.12817 0.330618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530771 0.661026 0 21.1719 8.17372

CAGE analysis