Hb_003398_090

Information

Type -
Description -
Location Contig3398: 160561-162390
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21000g
description POPTRDRAFT_770354; alpha-expansin 9 precursor family protein
nr
ID XP_012089051.1
description PREDICTED: expansin-A4 [Jatropha curcas]
swissprot
ID O48818
description Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1
trembl
ID A0A067LJT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01440 PE=3 SV=1
Gene Ontology
ID GO:0005576
description alpha-expansin 9 precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_090 0.0 - - PREDICTED: expansin-A4 [Jatropha curcas]
2 Hb_001430_090 0.0908468579 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
3 Hb_003913_060 0.0930205361 - - ATP binding protein, putative [Ricinus communis]
4 Hb_015978_010 0.1058160149 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
5 Hb_000139_500 0.1122927109 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
6 Hb_000393_030 0.1126482144 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_000163_010 0.1157389973 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
8 Hb_000751_060 0.1219888747 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
9 Hb_130563_010 0.1269443862 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
10 Hb_029510_090 0.1296213768 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
11 Hb_000318_060 0.1352588006 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000112_050 0.1364517953 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
13 Hb_000645_250 0.1437202883 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
14 Hb_000836_480 0.1447435962 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_168319_060 0.146435041 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
16 Hb_002900_040 0.1487887431 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
17 Hb_000120_880 0.1491682064 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
18 Hb_004223_180 0.1513409064 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
19 Hb_003640_010 0.1532209623 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_011849_020 0.1562398491 - - dioxygenase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003398_090 Hb_003398_090 Hb_001430_090 Hb_001430_090 Hb_003398_090--Hb_001430_090 Hb_003913_060 Hb_003913_060 Hb_003398_090--Hb_003913_060 Hb_015978_010 Hb_015978_010 Hb_003398_090--Hb_015978_010 Hb_000139_500 Hb_000139_500 Hb_003398_090--Hb_000139_500 Hb_000393_030 Hb_000393_030 Hb_003398_090--Hb_000393_030 Hb_000163_010 Hb_000163_010 Hb_003398_090--Hb_000163_010 Hb_002900_040 Hb_002900_040 Hb_001430_090--Hb_002900_040 Hb_001430_090--Hb_000393_030 Hb_001430_090--Hb_003913_060 Hb_001430_090--Hb_000163_010 Hb_130563_010 Hb_130563_010 Hb_001430_090--Hb_130563_010 Hb_003913_060--Hb_000163_010 Hb_000318_060 Hb_000318_060 Hb_003913_060--Hb_000318_060 Hb_003913_060--Hb_015978_010 Hb_003913_060--Hb_000139_500 Hb_011849_020 Hb_011849_020 Hb_003913_060--Hb_011849_020 Hb_015978_010--Hb_000163_010 Hb_000751_060 Hb_000751_060 Hb_015978_010--Hb_000751_060 Hb_015978_010--Hb_011849_020 Hb_010334_050 Hb_010334_050 Hb_015978_010--Hb_010334_050 Hb_000139_500--Hb_000318_060 Hb_000139_500--Hb_000393_030 Hb_003160_050 Hb_003160_050 Hb_000139_500--Hb_003160_050 Hb_008066_060 Hb_008066_060 Hb_000139_500--Hb_008066_060 Hb_001514_070 Hb_001514_070 Hb_000393_030--Hb_001514_070 Hb_000393_030--Hb_000318_060 Hb_002333_010 Hb_002333_010 Hb_000393_030--Hb_002333_010 Hb_002870_010 Hb_002870_010 Hb_000393_030--Hb_002870_010 Hb_000163_010--Hb_011849_020 Hb_000163_010--Hb_000318_060 Hb_003177_080 Hb_003177_080 Hb_000163_010--Hb_003177_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.282658 3.34622 4.65831 18.2564 0.219197 0.123964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0404494 0.0318182 0 34.4 13.501

CAGE analysis