Hb_003913_060

Information

Type -
Description -
Location Contig3913: 37599-39206
Sequence    

Annotation

kegg
ID rcu:RCOM_1508900
description ATP binding protein, putative
nr
ID XP_002511332.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q8GUH1
description U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2
trembl
ID B9RAV7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1508900 PE=4 SV=1
Gene Ontology
ID GO:0006950
description u-box domain-containing protein 52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_060 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000163_010 0.0754793905 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
3 Hb_000318_060 0.083426586 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003398_090 0.0930205361 - - PREDICTED: expansin-A4 [Jatropha curcas]
5 Hb_015978_010 0.096370443 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
6 Hb_000139_500 0.0975520577 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
7 Hb_011849_020 0.1129730175 - - dioxygenase family protein [Populus trichocarpa]
8 Hb_000393_030 0.1241159523 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_001568_010 0.1263588757 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001430_090 0.1340402928 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
11 Hb_029510_090 0.1358768227 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
12 Hb_000751_060 0.1384367554 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
13 Hb_006501_100 0.1405643415 - - malic enzyme, putative [Ricinus communis]
14 Hb_002333_010 0.1407672939 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
15 Hb_085315_010 0.1453544511 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
16 Hb_000127_080 0.149563597 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
17 Hb_000609_020 0.1502324952 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
18 Hb_002900_040 0.1534907122 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
19 Hb_000112_050 0.1536267053 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
20 Hb_000000_200 0.1549223948 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]

Gene co-expression network

sample Hb_003913_060 Hb_003913_060 Hb_000163_010 Hb_000163_010 Hb_003913_060--Hb_000163_010 Hb_000318_060 Hb_000318_060 Hb_003913_060--Hb_000318_060 Hb_003398_090 Hb_003398_090 Hb_003913_060--Hb_003398_090 Hb_015978_010 Hb_015978_010 Hb_003913_060--Hb_015978_010 Hb_000139_500 Hb_000139_500 Hb_003913_060--Hb_000139_500 Hb_011849_020 Hb_011849_020 Hb_003913_060--Hb_011849_020 Hb_000163_010--Hb_011849_020 Hb_000163_010--Hb_003398_090 Hb_000163_010--Hb_015978_010 Hb_000163_010--Hb_000318_060 Hb_003177_080 Hb_003177_080 Hb_000163_010--Hb_003177_080 Hb_000318_060--Hb_000139_500 Hb_000393_030 Hb_000393_030 Hb_000318_060--Hb_000393_030 Hb_002333_010 Hb_002333_010 Hb_000318_060--Hb_002333_010 Hb_001568_010 Hb_001568_010 Hb_000318_060--Hb_001568_010 Hb_008727_030 Hb_008727_030 Hb_000318_060--Hb_008727_030 Hb_001430_090 Hb_001430_090 Hb_003398_090--Hb_001430_090 Hb_003398_090--Hb_015978_010 Hb_003398_090--Hb_000139_500 Hb_003398_090--Hb_000393_030 Hb_000751_060 Hb_000751_060 Hb_015978_010--Hb_000751_060 Hb_015978_010--Hb_011849_020 Hb_010334_050 Hb_010334_050 Hb_015978_010--Hb_010334_050 Hb_000139_500--Hb_000393_030 Hb_003160_050 Hb_003160_050 Hb_000139_500--Hb_003160_050 Hb_008066_060 Hb_008066_060 Hb_000139_500--Hb_008066_060 Hb_000254_060 Hb_000254_060 Hb_011849_020--Hb_000254_060 Hb_179138_010 Hb_179138_010 Hb_011849_020--Hb_179138_010 Hb_000009_430 Hb_000009_430 Hb_011849_020--Hb_000009_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0260666 0.0496353 0.223866 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.319147 0.112373

CAGE analysis