Hb_004545_070

Information

Type -
Description -
Location Contig4545: 84006-96295
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03070g
description POPTRDRAFT_570919; hypothetical protein
nr
ID XP_012089148.1
description PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9SQT8
description Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1
trembl
ID A5ATW2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034026 PE=3 SV=1
Gene Ontology
ID GO:0003855
description bifunctional 3-dehydroquinate dehydratase shikimate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43381: 84138-88389 , PASA_asmbl_43382: 92794-93781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_070 0.0 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
2 Hb_008695_150 0.1352079841 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
3 Hb_009767_050 0.1420719628 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
4 Hb_013726_010 0.1436086352 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000165_200 0.1447159065 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_000032_250 0.1489687361 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
7 Hb_002072_040 0.1515492388 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
8 Hb_164926_040 0.1586194345 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
9 Hb_001439_010 0.1667610198 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
10 Hb_005663_090 0.1670375299 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
11 Hb_005168_020 0.1708996295 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
12 Hb_000680_070 0.1744986768 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
13 Hb_003688_210 0.1746599512 - - replication factor A 1, rfa1, putative [Ricinus communis]
14 Hb_004346_010 0.1756113852 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000720_090 0.1825809806 transcription factor TF Family: MYB myb, putative [Ricinus communis]
16 Hb_000186_290 0.1833656711 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
17 Hb_002339_030 0.1840472477 - - o-methyltransferase, putative [Ricinus communis]
18 Hb_008143_040 0.1845344697 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
19 Hb_000668_050 0.188217269 - - phosphoglycerate mutase, putative [Ricinus communis]
20 Hb_000042_380 0.188471768 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]

Gene co-expression network

sample Hb_004545_070 Hb_004545_070 Hb_008695_150 Hb_008695_150 Hb_004545_070--Hb_008695_150 Hb_009767_050 Hb_009767_050 Hb_004545_070--Hb_009767_050 Hb_013726_010 Hb_013726_010 Hb_004545_070--Hb_013726_010 Hb_000165_200 Hb_000165_200 Hb_004545_070--Hb_000165_200 Hb_000032_250 Hb_000032_250 Hb_004545_070--Hb_000032_250 Hb_002072_040 Hb_002072_040 Hb_004545_070--Hb_002072_040 Hb_000042_380 Hb_000042_380 Hb_008695_150--Hb_000042_380 Hb_005485_070 Hb_005485_070 Hb_008695_150--Hb_005485_070 Hb_005333_080 Hb_005333_080 Hb_008695_150--Hb_005333_080 Hb_000116_240 Hb_000116_240 Hb_008695_150--Hb_000116_240 Hb_001439_010 Hb_001439_010 Hb_008695_150--Hb_001439_010 Hb_000731_210 Hb_000731_210 Hb_008695_150--Hb_000731_210 Hb_002025_380 Hb_002025_380 Hb_009767_050--Hb_002025_380 Hb_002818_170 Hb_002818_170 Hb_009767_050--Hb_002818_170 Hb_009767_050--Hb_002072_040 Hb_002097_180 Hb_002097_180 Hb_009767_050--Hb_002097_180 Hb_003189_010 Hb_003189_010 Hb_009767_050--Hb_003189_010 Hb_006277_030 Hb_006277_030 Hb_009767_050--Hb_006277_030 Hb_013726_010--Hb_000032_250 Hb_013726_010--Hb_002072_040 Hb_001675_170 Hb_001675_170 Hb_013726_010--Hb_001675_170 Hb_008143_060 Hb_008143_060 Hb_013726_010--Hb_008143_060 Hb_013726_010--Hb_008695_150 Hb_164926_040 Hb_164926_040 Hb_000165_200--Hb_164926_040 Hb_001472_110 Hb_001472_110 Hb_000165_200--Hb_001472_110 Hb_002301_110 Hb_002301_110 Hb_000165_200--Hb_002301_110 Hb_002339_030 Hb_002339_030 Hb_000165_200--Hb_002339_030 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_000028_490 Hb_000028_490 Hb_000032_250--Hb_000028_490 Hb_000032_250--Hb_001675_170 Hb_000032_250--Hb_000165_200 Hb_028872_160 Hb_028872_160 Hb_000032_250--Hb_028872_160 Hb_002072_040--Hb_002025_380 Hb_005168_020 Hb_005168_020 Hb_002072_040--Hb_005168_020 Hb_002072_040--Hb_006277_030 Hb_002072_040--Hb_003189_010 Hb_005731_070 Hb_005731_070 Hb_002072_040--Hb_005731_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178184 0.482898 8.16499 10.8336 0.102099 0.207465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.704994 0.9709 0.798358 11.1338 5.70052

CAGE analysis