Hb_013726_010

Information

Type -
Description -
Location Contig13726: 4826-8736
Sequence    

Annotation

kegg
ID rcu:RCOM_1613790
description ATP binding protein, putative
nr
ID XP_002511797.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9ZPH9
description Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=2 SV=1
trembl
ID B9RDK8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1613790 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10281: 5232-8523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013726_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000032_250 0.1314317968 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
3 Hb_004545_070 0.1436086352 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
4 Hb_002072_040 0.1614521141 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
5 Hb_001675_170 0.1713577732 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 [Malus domestica]
6 Hb_008143_060 0.1725529357 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
7 Hb_008695_150 0.1733859422 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
8 Hb_002701_160 0.1747643482 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
9 Hb_004446_060 0.1761013658 - - neutral/alkaline invertase [Manihot esculenta]
10 Hb_011861_040 0.1775087383 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
11 Hb_006711_040 0.1780990872 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
12 Hb_001437_260 0.1819848212 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
13 Hb_005168_020 0.1842148602 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
14 Hb_001195_740 0.1873120976 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
15 Hb_009767_050 0.1885660009 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
16 Hb_007007_130 0.1891261149 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
17 Hb_164926_040 0.1909413365 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
18 Hb_000244_150 0.1913570998 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
19 Hb_001780_030 0.1914190193 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
20 Hb_003299_020 0.1915616686 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]

Gene co-expression network

sample Hb_013726_010 Hb_013726_010 Hb_000032_250 Hb_000032_250 Hb_013726_010--Hb_000032_250 Hb_004545_070 Hb_004545_070 Hb_013726_010--Hb_004545_070 Hb_002072_040 Hb_002072_040 Hb_013726_010--Hb_002072_040 Hb_001675_170 Hb_001675_170 Hb_013726_010--Hb_001675_170 Hb_008143_060 Hb_008143_060 Hb_013726_010--Hb_008143_060 Hb_008695_150 Hb_008695_150 Hb_013726_010--Hb_008695_150 Hb_000028_490 Hb_000028_490 Hb_000032_250--Hb_000028_490 Hb_000032_250--Hb_004545_070 Hb_000032_250--Hb_001675_170 Hb_000165_200 Hb_000165_200 Hb_000032_250--Hb_000165_200 Hb_028872_160 Hb_028872_160 Hb_000032_250--Hb_028872_160 Hb_004545_070--Hb_008695_150 Hb_009767_050 Hb_009767_050 Hb_004545_070--Hb_009767_050 Hb_004545_070--Hb_000165_200 Hb_004545_070--Hb_002072_040 Hb_002025_380 Hb_002025_380 Hb_002072_040--Hb_002025_380 Hb_002072_040--Hb_009767_050 Hb_005168_020 Hb_005168_020 Hb_002072_040--Hb_005168_020 Hb_006277_030 Hb_006277_030 Hb_002072_040--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002072_040--Hb_003189_010 Hb_005731_070 Hb_005731_070 Hb_002072_040--Hb_005731_070 Hb_001348_010 Hb_001348_010 Hb_001675_170--Hb_001348_010 Hb_003097_130 Hb_003097_130 Hb_001675_170--Hb_003097_130 Hb_021065_010 Hb_021065_010 Hb_001675_170--Hb_021065_010 Hb_000529_010 Hb_000529_010 Hb_001675_170--Hb_000529_010 Hb_010672_050 Hb_010672_050 Hb_001675_170--Hb_010672_050 Hb_001195_740 Hb_001195_740 Hb_008143_060--Hb_001195_740 Hb_006711_040 Hb_006711_040 Hb_008143_060--Hb_006711_040 Hb_001832_140 Hb_001832_140 Hb_008143_060--Hb_001832_140 Hb_001252_050 Hb_001252_050 Hb_008143_060--Hb_001252_050 Hb_000696_250 Hb_000696_250 Hb_008143_060--Hb_000696_250 Hb_000465_130 Hb_000465_130 Hb_008143_060--Hb_000465_130 Hb_000042_380 Hb_000042_380 Hb_008695_150--Hb_000042_380 Hb_005485_070 Hb_005485_070 Hb_008695_150--Hb_005485_070 Hb_005333_080 Hb_005333_080 Hb_008695_150--Hb_005333_080 Hb_000116_240 Hb_000116_240 Hb_008695_150--Hb_000116_240 Hb_001439_010 Hb_001439_010 Hb_008695_150--Hb_001439_010 Hb_000731_210 Hb_000731_210 Hb_008695_150--Hb_000731_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0271973 0.0583749 1.10997 0.869532 0 0.00863999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0205924 0.0810159 0.123167 0.876043 0.308907

CAGE analysis