Hb_003189_010

Information

Type -
Description -
Location Contig3189: 6728-7072
Sequence    

Annotation

kegg
ID tcc:TCM_020459
description Glutathione S-transferase
nr
ID KCW65100.1
description hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
swissprot
ID P81124
description Probable glutathione transferase (Fragment) OS=Aplysia californica PE=1 SV=1
trembl
ID A0A059BHE5
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02605 PE=3 SV=1
Gene Ontology
ID GO:0005515
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003189_010 0.0 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
2 Hb_002818_170 0.0717552938 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
3 Hb_006277_030 0.0722487764 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002025_380 0.0773942588 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
5 Hb_002097_180 0.1039291197 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
6 Hb_005731_070 0.1097143022 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000668_050 0.1164397648 - - phosphoglycerate mutase, putative [Ricinus communis]
8 Hb_006501_100 0.1197835726 - - malic enzyme, putative [Ricinus communis]
9 Hb_005144_080 0.1207821566 - - Serine carboxypeptidase, putative [Ricinus communis]
10 Hb_004282_010 0.1252784965 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
11 Hb_027556_060 0.1270846465 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
12 Hb_000714_060 0.1272091709 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
13 Hb_000011_370 0.1287628587 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
14 Hb_009767_050 0.1290730903 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
15 Hb_000014_080 0.13252928 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
16 Hb_002072_040 0.1350789314 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
17 Hb_007684_010 0.1355781521 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000749_120 0.1359276061 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
19 Hb_003754_020 0.1384688392 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001473_060 0.1412965386 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003189_010 Hb_003189_010 Hb_002818_170 Hb_002818_170 Hb_003189_010--Hb_002818_170 Hb_006277_030 Hb_006277_030 Hb_003189_010--Hb_006277_030 Hb_002025_380 Hb_002025_380 Hb_003189_010--Hb_002025_380 Hb_002097_180 Hb_002097_180 Hb_003189_010--Hb_002097_180 Hb_005731_070 Hb_005731_070 Hb_003189_010--Hb_005731_070 Hb_000668_050 Hb_000668_050 Hb_003189_010--Hb_000668_050 Hb_002818_170--Hb_006277_030 Hb_002818_170--Hb_002097_180 Hb_006501_100 Hb_006501_100 Hb_002818_170--Hb_006501_100 Hb_002818_170--Hb_002025_380 Hb_004282_010 Hb_004282_010 Hb_002818_170--Hb_004282_010 Hb_006277_030--Hb_002025_380 Hb_006277_030--Hb_006501_100 Hb_006277_030--Hb_004282_010 Hb_005144_080 Hb_005144_080 Hb_006277_030--Hb_005144_080 Hb_002025_380--Hb_002097_180 Hb_002025_380--Hb_005144_080 Hb_002025_380--Hb_006501_100 Hb_002097_180--Hb_006501_100 Hb_002097_180--Hb_006277_030 Hb_009615_030 Hb_009615_030 Hb_002097_180--Hb_009615_030 Hb_000011_370 Hb_000011_370 Hb_005731_070--Hb_000011_370 Hb_007386_030 Hb_007386_030 Hb_005731_070--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_000714_060 Hb_000714_060 Hb_005731_070--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160 Hb_001473_060 Hb_001473_060 Hb_000668_050--Hb_001473_060 Hb_007684_010 Hb_007684_010 Hb_000668_050--Hb_007684_010 Hb_000668_050--Hb_000714_060 Hb_003754_020 Hb_003754_020 Hb_000668_050--Hb_003754_020 Hb_000951_090 Hb_000951_090 Hb_000668_050--Hb_000951_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.101711 0.866126 1.48854 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.22824 0.351631

CAGE analysis