Hb_007684_010

Information

Type -
Description -
Location Contig7684: 16750-17487
Sequence    

Annotation

kegg
ID rcu:RCOM_0894010
description hypothetical protein
nr
ID XP_002523660.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCE1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0894010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007684_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003124_050 0.0889448002 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
3 Hb_000668_050 0.1010713475 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_003754_020 0.1292807125 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_002097_180 0.1343105642 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
6 Hb_003189_010 0.1355781521 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
7 Hb_002818_170 0.1419121806 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
8 Hb_001473_060 0.1422937003 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
9 Hb_001430_040 0.1426619449 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
10 Hb_000186_150 0.1452792632 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
11 Hb_004357_030 0.1539983282 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_004330_040 0.168525025 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000490_040 0.1687742878 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
14 Hb_006277_030 0.1689763146 - - conserved hypothetical protein [Ricinus communis]
15 Hb_135121_010 0.1693209824 - - PREDICTED: uncharacterized protein LOC105635544 [Jatropha curcas]
16 Hb_032260_060 0.1698697238 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
17 Hb_001777_010 0.1725112976 - - -
18 Hb_009767_050 0.1746568669 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
19 Hb_002025_380 0.1761219215 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
20 Hb_168561_010 0.1766794766 - - PREDICTED: notchless protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_007684_010 Hb_007684_010 Hb_003124_050 Hb_003124_050 Hb_007684_010--Hb_003124_050 Hb_000668_050 Hb_000668_050 Hb_007684_010--Hb_000668_050 Hb_003754_020 Hb_003754_020 Hb_007684_010--Hb_003754_020 Hb_002097_180 Hb_002097_180 Hb_007684_010--Hb_002097_180 Hb_003189_010 Hb_003189_010 Hb_007684_010--Hb_003189_010 Hb_002818_170 Hb_002818_170 Hb_007684_010--Hb_002818_170 Hb_000186_150 Hb_000186_150 Hb_003124_050--Hb_000186_150 Hb_001430_040 Hb_001430_040 Hb_003124_050--Hb_001430_040 Hb_146036_010 Hb_146036_010 Hb_003124_050--Hb_146036_010 Hb_000635_100 Hb_000635_100 Hb_003124_050--Hb_000635_100 Hb_002783_180 Hb_002783_180 Hb_003124_050--Hb_002783_180 Hb_001473_060 Hb_001473_060 Hb_000668_050--Hb_001473_060 Hb_000668_050--Hb_003189_010 Hb_000714_060 Hb_000714_060 Hb_000668_050--Hb_000714_060 Hb_000668_050--Hb_003754_020 Hb_000951_090 Hb_000951_090 Hb_000668_050--Hb_000951_090 Hb_004330_040 Hb_004330_040 Hb_003754_020--Hb_004330_040 Hb_003754_020--Hb_001473_060 Hb_032260_060 Hb_032260_060 Hb_003754_020--Hb_032260_060 Hb_004055_090 Hb_004055_090 Hb_003754_020--Hb_004055_090 Hb_002276_250 Hb_002276_250 Hb_003754_020--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_003754_020--Hb_004357_030 Hb_002097_180--Hb_002818_170 Hb_002025_380 Hb_002025_380 Hb_002097_180--Hb_002025_380 Hb_002097_180--Hb_003189_010 Hb_006501_100 Hb_006501_100 Hb_002097_180--Hb_006501_100 Hb_006277_030 Hb_006277_030 Hb_002097_180--Hb_006277_030 Hb_009615_030 Hb_009615_030 Hb_002097_180--Hb_009615_030 Hb_003189_010--Hb_002818_170 Hb_003189_010--Hb_006277_030 Hb_003189_010--Hb_002025_380 Hb_005731_070 Hb_005731_070 Hb_003189_010--Hb_005731_070 Hb_002818_170--Hb_006277_030 Hb_002818_170--Hb_006501_100 Hb_002818_170--Hb_002025_380 Hb_004282_010 Hb_004282_010 Hb_002818_170--Hb_004282_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.426138 0.947395 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.528205 0.2354

CAGE analysis