Hb_002097_180

Information

Type -
Description -
Location Contig2097: 257672-261546
Sequence    

Annotation

kegg
ID rcu:RCOM_1353560
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_012082451.1
description PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
swissprot
ID Q9SCP2
description Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2
trembl
ID A0A067K2B3
description Pectate lyase OS=Jatropha curcas GN=JCGZ_16572 PE=3 SV=1
Gene Ontology
ID GO:0031225
description probable pectate lyase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21698: 260440-261296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002097_180 0.0 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
2 Hb_002818_170 0.0722530959 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
3 Hb_002025_380 0.0987514944 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
4 Hb_003189_010 0.1039291197 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
5 Hb_006501_100 0.1146946891 - - malic enzyme, putative [Ricinus communis]
6 Hb_006277_030 0.1160923872 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009615_030 0.1210255202 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_009767_050 0.1235378137 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
9 Hb_004282_010 0.1274106399 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
10 Hb_000956_070 0.1288942135 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
11 Hb_007684_010 0.1343105642 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004357_030 0.1396526988 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_000014_080 0.1435527529 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
14 Hb_000668_050 0.1492065571 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_005144_080 0.150131594 - - Serine carboxypeptidase, putative [Ricinus communis]
16 Hb_000015_190 0.1522084174 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
17 Hb_001616_100 0.1529626936 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
18 Hb_000028_620 0.1534265664 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000749_160 0.1534888266 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_001777_010 0.1546226212 - - -

Gene co-expression network

sample Hb_002097_180 Hb_002097_180 Hb_002818_170 Hb_002818_170 Hb_002097_180--Hb_002818_170 Hb_002025_380 Hb_002025_380 Hb_002097_180--Hb_002025_380 Hb_003189_010 Hb_003189_010 Hb_002097_180--Hb_003189_010 Hb_006501_100 Hb_006501_100 Hb_002097_180--Hb_006501_100 Hb_006277_030 Hb_006277_030 Hb_002097_180--Hb_006277_030 Hb_009615_030 Hb_009615_030 Hb_002097_180--Hb_009615_030 Hb_002818_170--Hb_006277_030 Hb_002818_170--Hb_003189_010 Hb_002818_170--Hb_006501_100 Hb_002818_170--Hb_002025_380 Hb_004282_010 Hb_004282_010 Hb_002818_170--Hb_004282_010 Hb_002025_380--Hb_006277_030 Hb_002025_380--Hb_003189_010 Hb_005144_080 Hb_005144_080 Hb_002025_380--Hb_005144_080 Hb_002025_380--Hb_006501_100 Hb_003189_010--Hb_006277_030 Hb_005731_070 Hb_005731_070 Hb_003189_010--Hb_005731_070 Hb_000668_050 Hb_000668_050 Hb_003189_010--Hb_000668_050 Hb_006501_100--Hb_004282_010 Hb_006501_100--Hb_006277_030 Hb_000956_070 Hb_000956_070 Hb_006501_100--Hb_000956_070 Hb_000014_080 Hb_000014_080 Hb_006501_100--Hb_000014_080 Hb_006277_030--Hb_004282_010 Hb_006277_030--Hb_005144_080 Hb_002580_020 Hb_002580_020 Hb_009615_030--Hb_002580_020 Hb_081191_010 Hb_081191_010 Hb_009615_030--Hb_081191_010 Hb_003177_100 Hb_003177_100 Hb_009615_030--Hb_003177_100 Hb_000749_160 Hb_000749_160 Hb_009615_030--Hb_000749_160 Hb_000429_030 Hb_000429_030 Hb_009615_030--Hb_000429_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.271046 2.04561 6.15051 0.0110957 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0251956 0 0.0374863 3.77367 1.04415

CAGE analysis