Hb_000032_250

Information

Type -
Description -
Location Contig32: 222574-227362
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10560g
description POPTRDRAFT_751215; endo-glucanase 2 family protein
nr
ID XP_012086729.1
description PREDICTED: endoglucanase 6 [Jatropha curcas]
swissprot
ID Q42059
description Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2
trembl
ID B9GL66
description Endoglucanase OS=Populus trichocarpa GN=POPTR_0001s10560g PE=3 SV=2
Gene Ontology
ID GO:0004553
description endoglucanase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33709: 222584-227354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_250 0.0 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
2 Hb_013726_010 0.1314317968 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000028_490 0.1445732334 - - calmodulin-like protein 6a [Populus trichocarpa]
4 Hb_004545_070 0.1489687361 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
5 Hb_001675_170 0.1559261162 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 [Malus domestica]
6 Hb_000165_200 0.1631516485 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_028872_160 0.1640230084 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
8 Hb_001780_030 0.1655811976 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
9 Hb_007002_040 0.175648696 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
10 Hb_008695_150 0.1866816005 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
11 Hb_009767_050 0.1878852187 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
12 Hb_000046_240 0.192074801 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
13 Hb_002301_110 0.1924805127 - - PREDICTED: protein E6-like [Populus euphratica]
14 Hb_164926_040 0.1949172222 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
15 Hb_001348_010 0.1961886661 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
16 Hb_000244_150 0.1972911442 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
17 Hb_002072_040 0.1972936623 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
18 Hb_010672_050 0.1973974974 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
19 Hb_002276_250 0.1976288566 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
20 Hb_005333_080 0.1978809466 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000032_250 Hb_000032_250 Hb_013726_010 Hb_013726_010 Hb_000032_250--Hb_013726_010 Hb_000028_490 Hb_000028_490 Hb_000032_250--Hb_000028_490 Hb_004545_070 Hb_004545_070 Hb_000032_250--Hb_004545_070 Hb_001675_170 Hb_001675_170 Hb_000032_250--Hb_001675_170 Hb_000165_200 Hb_000165_200 Hb_000032_250--Hb_000165_200 Hb_028872_160 Hb_028872_160 Hb_000032_250--Hb_028872_160 Hb_013726_010--Hb_004545_070 Hb_002072_040 Hb_002072_040 Hb_013726_010--Hb_002072_040 Hb_013726_010--Hb_001675_170 Hb_008143_060 Hb_008143_060 Hb_013726_010--Hb_008143_060 Hb_008695_150 Hb_008695_150 Hb_013726_010--Hb_008695_150 Hb_001780_030 Hb_001780_030 Hb_000028_490--Hb_001780_030 Hb_127416_010 Hb_127416_010 Hb_000028_490--Hb_127416_010 Hb_183086_070 Hb_183086_070 Hb_000028_490--Hb_183086_070 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_007044_220 Hb_007044_220 Hb_000028_490--Hb_007044_220 Hb_004545_070--Hb_008695_150 Hb_009767_050 Hb_009767_050 Hb_004545_070--Hb_009767_050 Hb_004545_070--Hb_000165_200 Hb_004545_070--Hb_002072_040 Hb_001348_010 Hb_001348_010 Hb_001675_170--Hb_001348_010 Hb_003097_130 Hb_003097_130 Hb_001675_170--Hb_003097_130 Hb_021065_010 Hb_021065_010 Hb_001675_170--Hb_021065_010 Hb_000529_010 Hb_000529_010 Hb_001675_170--Hb_000529_010 Hb_010672_050 Hb_010672_050 Hb_001675_170--Hb_010672_050 Hb_164926_040 Hb_164926_040 Hb_000165_200--Hb_164926_040 Hb_001472_110 Hb_001472_110 Hb_000165_200--Hb_001472_110 Hb_002301_110 Hb_002301_110 Hb_000165_200--Hb_002301_110 Hb_002339_030 Hb_002339_030 Hb_000165_200--Hb_002339_030 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_004032_210 Hb_004032_210 Hb_028872_160--Hb_004032_210 Hb_007002_040 Hb_007002_040 Hb_028872_160--Hb_007002_040 Hb_000307_220 Hb_000307_220 Hb_028872_160--Hb_000307_220 Hb_011214_110 Hb_011214_110 Hb_028872_160--Hb_011214_110 Hb_002518_090 Hb_002518_090 Hb_028872_160--Hb_002518_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.211251 1.03241 22.229 29.6083 0.593719 0.616787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.891412 2.3519 5.03524 17.8311 7.71984

CAGE analysis