Hb_183086_070

Information

Type -
Description -
Location Contig183086: 53260-54711
Sequence    

Annotation

kegg
ID rcu:RCOM_1379730
description ATP binding protein, putative
nr
ID XP_012081081.1
description PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
swissprot
ID P32839
description Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
trembl
ID A0A067K2H4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18154 PE=4 SV=1
Gene Ontology
ID GO:0005524
description mitochondrial chaperone bcs1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17874: 53206-53428 , PASA_asmbl_17875: 53465-53899 , PASA_asmbl_17877: 54564-54894
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183086_070 0.0 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
2 Hb_127416_010 0.1358821146 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
3 Hb_000028_490 0.1432074654 - - calmodulin-like protein 6a [Populus trichocarpa]
4 Hb_002284_080 0.1535101247 - - protein with unknown function [Ricinus communis]
5 Hb_003710_020 0.1558273708 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
6 Hb_007044_220 0.15937298 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_080477_080 0.1647832056 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
8 Hb_002000_090 0.1737153011 - - 60S ribosomal protein L3B [Hevea brasiliensis]
9 Hb_002119_040 0.1805255146 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_000002_350 0.1816610003 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
11 Hb_023278_030 0.1831463139 - - zinc finger protein, putative [Ricinus communis]
12 Hb_005333_080 0.1926751169 - - conserved hypothetical protein [Ricinus communis]
13 Hb_158092_040 0.1961868649 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
14 Hb_001353_020 0.200722775 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000062_530 0.2021806982 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
16 Hb_001022_050 0.202344869 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
17 Hb_012760_090 0.2027559205 - - Aspartic proteinase-like protein 1 [Morus notabilis]
18 Hb_143766_080 0.2030044769 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
19 Hb_001433_160 0.2033525083 - - phosphatase 2C family protein [Populus trichocarpa]
20 Hb_001493_090 0.2036900753 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_183086_070 Hb_183086_070 Hb_127416_010 Hb_127416_010 Hb_183086_070--Hb_127416_010 Hb_000028_490 Hb_000028_490 Hb_183086_070--Hb_000028_490 Hb_002284_080 Hb_002284_080 Hb_183086_070--Hb_002284_080 Hb_003710_020 Hb_003710_020 Hb_183086_070--Hb_003710_020 Hb_007044_220 Hb_007044_220 Hb_183086_070--Hb_007044_220 Hb_080477_080 Hb_080477_080 Hb_183086_070--Hb_080477_080 Hb_023278_030 Hb_023278_030 Hb_127416_010--Hb_023278_030 Hb_000002_350 Hb_000002_350 Hb_127416_010--Hb_000002_350 Hb_012760_090 Hb_012760_090 Hb_127416_010--Hb_012760_090 Hb_127416_010--Hb_000028_490 Hb_127416_010--Hb_007044_220 Hb_001780_030 Hb_001780_030 Hb_000028_490--Hb_001780_030 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_000028_490--Hb_007044_220 Hb_002000_090 Hb_002000_090 Hb_002284_080--Hb_002000_090 Hb_001433_160 Hb_001433_160 Hb_002284_080--Hb_001433_160 Hb_005054_020 Hb_005054_020 Hb_002284_080--Hb_005054_020 Hb_002284_080--Hb_003710_020 Hb_001353_020 Hb_001353_020 Hb_002284_080--Hb_001353_020 Hb_143766_080 Hb_143766_080 Hb_003710_020--Hb_143766_080 Hb_003710_020--Hb_080477_080 Hb_000062_530 Hb_000062_530 Hb_003710_020--Hb_000062_530 Hb_034507_060 Hb_034507_060 Hb_003710_020--Hb_034507_060 Hb_001545_130 Hb_001545_130 Hb_003710_020--Hb_001545_130 Hb_004522_030 Hb_004522_030 Hb_003710_020--Hb_004522_030 Hb_003875_040 Hb_003875_040 Hb_007044_220--Hb_003875_040 Hb_005839_030 Hb_005839_030 Hb_007044_220--Hb_005839_030 Hb_002592_050 Hb_002592_050 Hb_007044_220--Hb_002592_050 Hb_158092_040 Hb_158092_040 Hb_080477_080--Hb_158092_040 Hb_080477_080--Hb_004522_030 Hb_080477_080--Hb_143766_080 Hb_001054_090 Hb_001054_090 Hb_080477_080--Hb_001054_090 Hb_080477_080--Hb_000062_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216528 1.78357 3.11824 5.41524 0 0.0286765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.356659 0.178556 1.48377 3.03555 0.90593

CAGE analysis