Hb_000002_350

Information

Type transcription factor
Description TF Family: SNF2
Location Contig2: 539741-546445
Sequence    

Annotation

kegg
ID rcu:RCOM_0492090
description DNA repair helicase rad5,16, putative (EC:2.7.11.1)
nr
ID XP_002529311.1
description DNA repair helicase rad5,16, putative [Ricinus communis]
swissprot
ID Q9FIY7
description Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1
trembl
ID B9STJ2
description DNA repair helicase rad5,16, putative OS=Ricinus communis GN=RCOM_0492090 PE=4 SV=1
Gene Ontology
ID GO:0005634
description swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20100: 540298-540609 , PASA_asmbl_20101: 540743-542523 , PASA_asmbl_20102: 544503-545054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_350 0.0 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
2 Hb_023278_030 0.0885206301 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000731_210 0.1246897994 - - conserved hypothetical protein [Ricinus communis]
4 Hb_127416_010 0.1368864951 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
5 Hb_005542_030 0.1414302125 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
6 Hb_003299_020 0.1462018596 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
7 Hb_005545_020 0.1483505152 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
8 Hb_005333_080 0.1501181621 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010672_050 0.1508023482 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
10 Hb_001019_160 0.1534455367 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003879_020 0.1539220413 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
12 Hb_001433_160 0.1573638409 - - phosphatase 2C family protein [Populus trichocarpa]
13 Hb_001048_100 0.1577381849 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
14 Hb_001437_260 0.1583029901 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
15 Hb_043987_010 0.1594087886 - - glutathione s-transferase, putative [Ricinus communis]
16 Hb_031385_010 0.1604017187 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
17 Hb_001345_020 0.1610037733 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
18 Hb_001638_150 0.1629642594 - - acyltransferase, putative [Ricinus communis]
19 Hb_002301_370 0.1650294706 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
20 Hb_005357_120 0.1678413728 transcription factor TF Family: MYB-related -

Gene co-expression network

sample Hb_000002_350 Hb_000002_350 Hb_023278_030 Hb_023278_030 Hb_000002_350--Hb_023278_030 Hb_000731_210 Hb_000731_210 Hb_000002_350--Hb_000731_210 Hb_127416_010 Hb_127416_010 Hb_000002_350--Hb_127416_010 Hb_005542_030 Hb_005542_030 Hb_000002_350--Hb_005542_030 Hb_003299_020 Hb_003299_020 Hb_000002_350--Hb_003299_020 Hb_005545_020 Hb_005545_020 Hb_000002_350--Hb_005545_020 Hb_023278_030--Hb_127416_010 Hb_001022_050 Hb_001022_050 Hb_023278_030--Hb_001022_050 Hb_023278_030--Hb_005545_020 Hb_002477_100 Hb_002477_100 Hb_023278_030--Hb_002477_100 Hb_000529_040 Hb_000529_040 Hb_023278_030--Hb_000529_040 Hb_002301_370 Hb_002301_370 Hb_000731_210--Hb_002301_370 Hb_000024_130 Hb_000024_130 Hb_000731_210--Hb_000024_130 Hb_001048_100 Hb_001048_100 Hb_000731_210--Hb_001048_100 Hb_031385_010 Hb_031385_010 Hb_000731_210--Hb_031385_010 Hb_000318_170 Hb_000318_170 Hb_000731_210--Hb_000318_170 Hb_003106_230 Hb_003106_230 Hb_000731_210--Hb_003106_230 Hb_183086_070 Hb_183086_070 Hb_127416_010--Hb_183086_070 Hb_012760_090 Hb_012760_090 Hb_127416_010--Hb_012760_090 Hb_000028_490 Hb_000028_490 Hb_127416_010--Hb_000028_490 Hb_007044_220 Hb_007044_220 Hb_127416_010--Hb_007044_220 Hb_006528_020 Hb_006528_020 Hb_005542_030--Hb_006528_020 Hb_043987_010 Hb_043987_010 Hb_005542_030--Hb_043987_010 Hb_000163_180 Hb_000163_180 Hb_005542_030--Hb_000163_180 Hb_000152_170 Hb_000152_170 Hb_005542_030--Hb_000152_170 Hb_002361_010 Hb_002361_010 Hb_005542_030--Hb_002361_010 Hb_000482_070 Hb_000482_070 Hb_005542_030--Hb_000482_070 Hb_003299_020--Hb_005545_020 Hb_000753_110 Hb_000753_110 Hb_003299_020--Hb_000753_110 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_001377_530 Hb_001377_530 Hb_003299_020--Hb_001377_530 Hb_000009_420 Hb_000009_420 Hb_003299_020--Hb_000009_420 Hb_003398_040 Hb_003398_040 Hb_003299_020--Hb_003398_040 Hb_000042_380 Hb_000042_380 Hb_005545_020--Hb_000042_380 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_004883_020 Hb_004883_020 Hb_005545_020--Hb_004883_020 Hb_007575_030 Hb_007575_030 Hb_005545_020--Hb_007575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.231666 0.546718 0.483569 0 0.00472719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0245416 0.019313 0.0555514 0.348237 0.165264

CAGE analysis