Hb_001022_050

Information

Type -
Description -
Location Contig1022: 81310-82572
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07780g
description hypothetical protein
nr
ID XP_006373838.1
description hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FKU9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s07780g PE=4 SV=1
Gene Ontology
ID GO:0008152
description alpha beta hydrolase domain-containing protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001022_050 0.0 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
2 Hb_023278_030 0.1544063829 - - zinc finger protein, putative [Ricinus communis]
3 Hb_127416_010 0.1677993547 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
4 Hb_000005_340 0.1767461221 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
5 Hb_000057_080 0.1829441687 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
6 Hb_000002_350 0.1850095006 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
7 Hb_019863_030 0.1892138083 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
8 Hb_001287_060 0.1898688488 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
9 Hb_000529_040 0.19285761 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
10 Hb_002597_020 0.1933137041 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_002701_160 0.1946634525 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
12 Hb_000007_430 0.1982187547 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
13 Hb_004495_020 0.1997496949 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_183086_070 0.202344869 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
15 Hb_002025_350 0.2024518109 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
16 Hb_007044_220 0.2041050381 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
17 Hb_000139_140 0.2073566801 - - Acyl-CoA synthetase [Ricinus communis]
18 Hb_003185_090 0.2079504582 - - Boron transporter, putative [Ricinus communis]
19 Hb_001195_220 0.2095258149 - - sugar transporter, putative [Ricinus communis]
20 Hb_029584_090 0.209692521 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]

Gene co-expression network

sample Hb_001022_050 Hb_001022_050 Hb_023278_030 Hb_023278_030 Hb_001022_050--Hb_023278_030 Hb_127416_010 Hb_127416_010 Hb_001022_050--Hb_127416_010 Hb_000005_340 Hb_000005_340 Hb_001022_050--Hb_000005_340 Hb_000057_080 Hb_000057_080 Hb_001022_050--Hb_000057_080 Hb_000002_350 Hb_000002_350 Hb_001022_050--Hb_000002_350 Hb_019863_030 Hb_019863_030 Hb_001022_050--Hb_019863_030 Hb_023278_030--Hb_000002_350 Hb_023278_030--Hb_127416_010 Hb_005545_020 Hb_005545_020 Hb_023278_030--Hb_005545_020 Hb_002477_100 Hb_002477_100 Hb_023278_030--Hb_002477_100 Hb_000529_040 Hb_000529_040 Hb_023278_030--Hb_000529_040 Hb_183086_070 Hb_183086_070 Hb_127416_010--Hb_183086_070 Hb_127416_010--Hb_000002_350 Hb_012760_090 Hb_012760_090 Hb_127416_010--Hb_012760_090 Hb_000028_490 Hb_000028_490 Hb_127416_010--Hb_000028_490 Hb_007044_220 Hb_007044_220 Hb_127416_010--Hb_007044_220 Hb_000005_340--Hb_019863_030 Hb_000024_130 Hb_000024_130 Hb_000005_340--Hb_000024_130 Hb_000847_020 Hb_000847_020 Hb_000005_340--Hb_000847_020 Hb_001433_160 Hb_001433_160 Hb_000005_340--Hb_001433_160 Hb_000007_430 Hb_000007_430 Hb_000005_340--Hb_000007_430 Hb_001287_060 Hb_001287_060 Hb_000005_340--Hb_001287_060 Hb_006922_090 Hb_006922_090 Hb_000057_080--Hb_006922_090 Hb_030944_010 Hb_030944_010 Hb_000057_080--Hb_030944_010 Hb_000057_080--Hb_001287_060 Hb_000139_140 Hb_000139_140 Hb_000057_080--Hb_000139_140 Hb_001366_060 Hb_001366_060 Hb_000057_080--Hb_001366_060 Hb_000731_210 Hb_000731_210 Hb_000002_350--Hb_000731_210 Hb_005542_030 Hb_005542_030 Hb_000002_350--Hb_005542_030 Hb_003299_020 Hb_003299_020 Hb_000002_350--Hb_003299_020 Hb_000002_350--Hb_005545_020 Hb_019863_030--Hb_000007_430 Hb_004586_240 Hb_004586_240 Hb_019863_030--Hb_004586_240 Hb_005504_030 Hb_005504_030 Hb_019863_030--Hb_005504_030 Hb_019863_030--Hb_000139_140 Hb_172706_020 Hb_172706_020 Hb_019863_030--Hb_172706_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.20799 2.36168 1.98033 0 0.102932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.436644 0.274584 0.486796 2.54804 0.269632

CAGE analysis