Hb_000007_430

Information

Type -
Description -
Location Contig7: 394487-394966
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14280g
description POPTRDRAFT_658975; hypothetical protein
nr
ID XP_002315971.2
description hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
swissprot
ID Q9LI84
description Probable calcium-binding protein CML16 OS=Arabidopsis thaliana GN=CML16 PE=2 SV=2
trembl
ID B9HWP7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14280g PE=4 SV=2
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54770: 394475-395352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_430 0.0 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
2 Hb_019863_030 0.1251368915 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
3 Hb_000005_340 0.157045527 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
4 Hb_000984_260 0.1625915269 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
5 Hb_000175_470 0.1675311183 - - lactoylglutathione lyase, putative [Ricinus communis]
6 Hb_001922_060 0.1711353597 - - ATP binding protein, putative [Ricinus communis]
7 Hb_172706_020 0.1759567354 - - PREDICTED: protein ABIL2 [Jatropha curcas]
8 Hb_000567_180 0.1863238446 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
9 Hb_011633_040 0.1896537008 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
10 Hb_143766_080 0.1910375478 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
11 Hb_001287_060 0.1949870099 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
12 Hb_001433_160 0.1953702331 - - phosphatase 2C family protein [Populus trichocarpa]
13 Hb_001300_170 0.1961584005 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000732_190 0.1971473359 - - structural molecule, putative [Ricinus communis]
15 Hb_001022_050 0.1982187547 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
16 Hb_000421_270 0.1985704402 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
17 Hb_002701_160 0.1996489385 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
18 Hb_002025_350 0.2013887564 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
19 Hb_000320_020 0.2024011183 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
20 Hb_002960_090 0.2024322594 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000007_430 Hb_000007_430 Hb_019863_030 Hb_019863_030 Hb_000007_430--Hb_019863_030 Hb_000005_340 Hb_000005_340 Hb_000007_430--Hb_000005_340 Hb_000984_260 Hb_000984_260 Hb_000007_430--Hb_000984_260 Hb_000175_470 Hb_000175_470 Hb_000007_430--Hb_000175_470 Hb_001922_060 Hb_001922_060 Hb_000007_430--Hb_001922_060 Hb_172706_020 Hb_172706_020 Hb_000007_430--Hb_172706_020 Hb_004586_240 Hb_004586_240 Hb_019863_030--Hb_004586_240 Hb_005504_030 Hb_005504_030 Hb_019863_030--Hb_005504_030 Hb_000139_140 Hb_000139_140 Hb_019863_030--Hb_000139_140 Hb_019863_030--Hb_000005_340 Hb_019863_030--Hb_172706_020 Hb_000024_130 Hb_000024_130 Hb_000005_340--Hb_000024_130 Hb_000847_020 Hb_000847_020 Hb_000005_340--Hb_000847_020 Hb_001433_160 Hb_001433_160 Hb_000005_340--Hb_001433_160 Hb_001287_060 Hb_001287_060 Hb_000005_340--Hb_001287_060 Hb_002960_090 Hb_002960_090 Hb_000984_260--Hb_002960_090 Hb_005701_110 Hb_005701_110 Hb_000984_260--Hb_005701_110 Hb_006210_020 Hb_006210_020 Hb_000984_260--Hb_006210_020 Hb_000984_260--Hb_019863_030 Hb_001728_020 Hb_001728_020 Hb_000984_260--Hb_001728_020 Hb_002539_040 Hb_002539_040 Hb_000175_470--Hb_002539_040 Hb_001148_100 Hb_001148_100 Hb_000175_470--Hb_001148_100 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_005408_070 Hb_005408_070 Hb_000175_470--Hb_005408_070 Hb_000175_470--Hb_172706_020 Hb_000567_180 Hb_000567_180 Hb_000175_470--Hb_000567_180 Hb_026549_050 Hb_026549_050 Hb_001922_060--Hb_026549_050 Hb_000181_210 Hb_000181_210 Hb_001922_060--Hb_000181_210 Hb_000832_280 Hb_000832_280 Hb_001922_060--Hb_000832_280 Hb_000002_360 Hb_000002_360 Hb_001922_060--Hb_000002_360 Hb_004324_030 Hb_004324_030 Hb_001922_060--Hb_004324_030 Hb_001922_060--Hb_000567_180 Hb_000940_210 Hb_000940_210 Hb_172706_020--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_172706_020--Hb_023226_030 Hb_002518_090 Hb_002518_090 Hb_172706_020--Hb_002518_090 Hb_034507_060 Hb_034507_060 Hb_172706_020--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_172706_020--Hb_004218_130 Hb_000309_030 Hb_000309_030 Hb_172706_020--Hb_000309_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.507181 7.92146 11.2991 10.6316 0.0617751 0.840171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.861852 5.98043 0.947511 13.4232 2.71653

CAGE analysis