Hb_002960_090

Information

Type -
Description -
Location Contig2960: 69279-84273
Sequence    

Annotation

kegg
ID rcu:RCOM_1598310
description protein with unknown function
nr
ID XP_002510556.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q14807
description Kinesin-like protein KIF22 OS=Homo sapiens GN=KIF22 PE=1 SV=5
trembl
ID B9R8B3
description Kinesin-like protein OS=Ricinus communis GN=RCOM_1598310 PE=3 SV=1
Gene Ontology
ID GO:0005488
description kinesin-like protein kif22 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30950: 69304-69557 , PASA_asmbl_30951: 69911-70191 , PASA_asmbl_30953: 70539-70791 , PASA_asmbl_30955: 71401-72784 , PASA_asmbl_30956: 73001-73704 , PASA_asmbl_30957: 73041-73665 , PASA_asmbl_30958: 74322-83571 , PASA_asmbl_30959: 83775-84016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_090 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_015778_040 0.1299974639 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
3 Hb_101146_010 0.1340448103 - - PREDICTED: peregrin-like [Jatropha curcas]
4 Hb_000984_260 0.1346945056 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
5 Hb_002627_020 0.1386565764 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
6 Hb_006210_020 0.1416398183 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
7 Hb_005701_110 0.1508765722 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
8 Hb_124677_030 0.1511394594 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
9 Hb_000189_130 0.1513100688 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
10 Hb_002235_380 0.1562312789 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
11 Hb_000589_170 0.1606356062 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
12 Hb_000757_130 0.1620676005 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002534_130 0.1625940093 - - membrane associated ring finger 1,8, putative [Ricinus communis]
14 Hb_010534_020 0.1628615201 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
15 Hb_000345_460 0.1635338958 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
16 Hb_002016_140 0.1655597274 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
17 Hb_004117_190 0.1655645125 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
18 Hb_000529_040 0.166132449 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
19 Hb_001155_050 0.166370368 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
20 Hb_003040_040 0.1667639341 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_090 Hb_002960_090 Hb_015778_040 Hb_015778_040 Hb_002960_090--Hb_015778_040 Hb_101146_010 Hb_101146_010 Hb_002960_090--Hb_101146_010 Hb_000984_260 Hb_000984_260 Hb_002960_090--Hb_000984_260 Hb_002627_020 Hb_002627_020 Hb_002960_090--Hb_002627_020 Hb_006210_020 Hb_006210_020 Hb_002960_090--Hb_006210_020 Hb_005701_110 Hb_005701_110 Hb_002960_090--Hb_005701_110 Hb_000589_170 Hb_000589_170 Hb_015778_040--Hb_000589_170 Hb_001155_050 Hb_001155_050 Hb_015778_040--Hb_001155_050 Hb_002534_130 Hb_002534_130 Hb_015778_040--Hb_002534_130 Hb_001729_020 Hb_001729_020 Hb_015778_040--Hb_001729_020 Hb_002686_150 Hb_002686_150 Hb_015778_040--Hb_002686_150 Hb_000098_180 Hb_000098_180 Hb_015778_040--Hb_000098_180 Hb_004117_190 Hb_004117_190 Hb_101146_010--Hb_004117_190 Hb_000757_130 Hb_000757_130 Hb_101146_010--Hb_000757_130 Hb_007741_130 Hb_007741_130 Hb_101146_010--Hb_007741_130 Hb_001114_170 Hb_001114_170 Hb_101146_010--Hb_001114_170 Hb_000046_310 Hb_000046_310 Hb_101146_010--Hb_000046_310 Hb_000984_260--Hb_005701_110 Hb_000007_430 Hb_000007_430 Hb_000984_260--Hb_000007_430 Hb_000984_260--Hb_006210_020 Hb_019863_030 Hb_019863_030 Hb_000984_260--Hb_019863_030 Hb_001728_020 Hb_001728_020 Hb_000984_260--Hb_001728_020 Hb_000172_280 Hb_000172_280 Hb_002627_020--Hb_000172_280 Hb_000175_470 Hb_000175_470 Hb_002627_020--Hb_000175_470 Hb_027380_190 Hb_027380_190 Hb_002627_020--Hb_027380_190 Hb_000310_120 Hb_000310_120 Hb_002627_020--Hb_000310_120 Hb_000648_050 Hb_000648_050 Hb_002627_020--Hb_000648_050 Hb_000098_150 Hb_000098_150 Hb_006210_020--Hb_000098_150 Hb_004108_210 Hb_004108_210 Hb_006210_020--Hb_004108_210 Hb_006210_020--Hb_007741_130 Hb_002194_050 Hb_002194_050 Hb_006210_020--Hb_002194_050 Hb_006210_020--Hb_004117_190 Hb_012545_030 Hb_012545_030 Hb_005701_110--Hb_012545_030 Hb_005701_110--Hb_001155_050 Hb_006120_150 Hb_006120_150 Hb_005701_110--Hb_006120_150 Hb_005701_110--Hb_015778_040 Hb_008768_020 Hb_008768_020 Hb_005701_110--Hb_008768_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139553 0.919691 2.69331 1.52811 0.0580255 0.239705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.752253 1.06555 0.185469 1.28028 0.643633

CAGE analysis