Hb_001922_060

Information

Type -
Description -
Location Contig1922: 54962-61962
Sequence    

Annotation

kegg
ID rcu:RCOM_1581520
description ATP binding protein, putative (EC:3.6.4.3)
nr
ID XP_002513623.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q7ZZ25
description ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2
trembl
ID B9RIQ4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1581520 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19159: 55121-61545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_060 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_026549_050 0.0918963157 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
3 Hb_000181_210 0.1104089588 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
4 Hb_000832_280 0.1352341049 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
5 Hb_000002_360 0.1356914445 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
6 Hb_004324_030 0.1415188191 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
7 Hb_000567_180 0.1455700025 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
8 Hb_001287_060 0.1516648685 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
9 Hb_000216_050 0.1622802167 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
10 Hb_003142_060 0.1639472592 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
11 Hb_007416_290 0.1650585954 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
12 Hb_001433_160 0.1657301843 - - phosphatase 2C family protein [Populus trichocarpa]
13 Hb_006816_420 0.1657941792 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
14 Hb_042509_020 0.1692395932 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
15 Hb_000866_320 0.1698048342 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_000261_420 0.1702086856 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
17 Hb_000007_430 0.1711353597 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
18 Hb_143766_080 0.1730118374 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
19 Hb_002739_040 0.173396726 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_002028_160 0.1754711721 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]

Gene co-expression network

sample Hb_001922_060 Hb_001922_060 Hb_026549_050 Hb_026549_050 Hb_001922_060--Hb_026549_050 Hb_000181_210 Hb_000181_210 Hb_001922_060--Hb_000181_210 Hb_000832_280 Hb_000832_280 Hb_001922_060--Hb_000832_280 Hb_000002_360 Hb_000002_360 Hb_001922_060--Hb_000002_360 Hb_004324_030 Hb_004324_030 Hb_001922_060--Hb_004324_030 Hb_000567_180 Hb_000567_180 Hb_001922_060--Hb_000567_180 Hb_026549_050--Hb_000181_210 Hb_026549_050--Hb_004324_030 Hb_026549_050--Hb_000002_360 Hb_000003_020 Hb_000003_020 Hb_026549_050--Hb_000003_020 Hb_026549_050--Hb_000832_280 Hb_000181_210--Hb_000832_280 Hb_042509_020 Hb_042509_020 Hb_000181_210--Hb_042509_020 Hb_000181_210--Hb_004324_030 Hb_000056_350 Hb_000056_350 Hb_000181_210--Hb_000056_350 Hb_001287_060 Hb_001287_060 Hb_000832_280--Hb_001287_060 Hb_000832_280--Hb_000056_350 Hb_000832_280--Hb_004324_030 Hb_000832_280--Hb_000002_360 Hb_000866_320 Hb_000866_320 Hb_000002_360--Hb_000866_320 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_004324_030--Hb_042509_020 Hb_004324_030--Hb_000003_020 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_005408_070 Hb_005408_070 Hb_000567_180--Hb_005408_070 Hb_002539_040 Hb_002539_040 Hb_000567_180--Hb_002539_040 Hb_000175_470 Hb_000175_470 Hb_000567_180--Hb_000175_470 Hb_000567_180--Hb_000216_050 Hb_000567_180--Hb_026549_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134183 11.3354 9.10178 22.398 0.0669229 0.223423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.468681 4.63817 1.56121 18.6468 5.31953

CAGE analysis