Hb_001433_160

Information

Type -
Description -
Location Contig1433: 155331-159073
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01370g
description POPTRDRAFT_729481; phosphatase 2C family protein
nr
ID XP_002318972.1
description phosphatase 2C family protein [Populus trichocarpa]
swissprot
ID Q0WRB2
description Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1
trembl
ID B9I7A6
description Phosphatase 2C family protein OS=Populus trichocarpa GN=POPTR_0013s01370g PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11412: 155126-159013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_160 0.0 - - phosphatase 2C family protein [Populus trichocarpa]
2 Hb_000009_150 0.108168803 - - carbohydrate transporter, putative [Ricinus communis]
3 Hb_002284_080 0.1287054159 - - protein with unknown function [Ricinus communis]
4 Hb_000002_360 0.1314757727 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
5 Hb_000009_300 0.1408844763 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
6 Hb_000024_130 0.1426649193 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003670_030 0.1446150076 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
8 Hb_005064_070 0.1476710508 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
9 Hb_000005_340 0.1484479588 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
10 Hb_001776_100 0.1491154433 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
11 Hb_000002_350 0.1573638409 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
12 Hb_000152_170 0.1582591236 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
13 Hb_005054_020 0.1586401345 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
14 Hb_000913_080 0.1589189196 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
15 Hb_004421_010 0.1592128688 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_143766_080 0.1603431645 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
17 Hb_003430_070 0.1622730436 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
18 Hb_043987_010 0.1625965347 - - glutathione s-transferase, putative [Ricinus communis]
19 Hb_001922_060 0.1657301843 - - ATP binding protein, putative [Ricinus communis]
20 Hb_002000_090 0.1675408503 - - 60S ribosomal protein L3B [Hevea brasiliensis]

Gene co-expression network

sample Hb_001433_160 Hb_001433_160 Hb_000009_150 Hb_000009_150 Hb_001433_160--Hb_000009_150 Hb_002284_080 Hb_002284_080 Hb_001433_160--Hb_002284_080 Hb_000002_360 Hb_000002_360 Hb_001433_160--Hb_000002_360 Hb_000009_300 Hb_000009_300 Hb_001433_160--Hb_000009_300 Hb_000024_130 Hb_000024_130 Hb_001433_160--Hb_000024_130 Hb_003670_030 Hb_003670_030 Hb_001433_160--Hb_003670_030 Hb_003430_070 Hb_003430_070 Hb_000009_150--Hb_003430_070 Hb_005080_020 Hb_005080_020 Hb_000009_150--Hb_005080_020 Hb_004032_090 Hb_004032_090 Hb_000009_150--Hb_004032_090 Hb_000329_790 Hb_000329_790 Hb_000009_150--Hb_000329_790 Hb_048476_040 Hb_048476_040 Hb_000009_150--Hb_048476_040 Hb_002000_090 Hb_002000_090 Hb_002284_080--Hb_002000_090 Hb_005054_020 Hb_005054_020 Hb_002284_080--Hb_005054_020 Hb_003710_020 Hb_003710_020 Hb_002284_080--Hb_003710_020 Hb_183086_070 Hb_183086_070 Hb_002284_080--Hb_183086_070 Hb_001353_020 Hb_001353_020 Hb_002284_080--Hb_001353_020 Hb_026549_050 Hb_026549_050 Hb_000002_360--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000002_360--Hb_000832_280 Hb_000866_320 Hb_000866_320 Hb_000002_360--Hb_000866_320 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_001922_060 Hb_001922_060 Hb_000002_360--Hb_001922_060 Hb_005649_010 Hb_005649_010 Hb_000009_300--Hb_005649_010 Hb_006615_160 Hb_006615_160 Hb_000009_300--Hb_006615_160 Hb_002324_050 Hb_002324_050 Hb_000009_300--Hb_002324_050 Hb_001776_100 Hb_001776_100 Hb_000009_300--Hb_001776_100 Hb_003025_150 Hb_003025_150 Hb_000009_300--Hb_003025_150 Hb_000731_210 Hb_000731_210 Hb_000024_130--Hb_000731_210 Hb_000760_080 Hb_000760_080 Hb_000024_130--Hb_000760_080 Hb_007575_030 Hb_007575_030 Hb_000024_130--Hb_007575_030 Hb_003106_230 Hb_003106_230 Hb_000024_130--Hb_003106_230 Hb_042202_020 Hb_042202_020 Hb_000024_130--Hb_042202_020 Hb_003142_060 Hb_003142_060 Hb_000024_130--Hb_003142_060 Hb_005064_070 Hb_005064_070 Hb_003670_030--Hb_005064_070 Hb_056196_060 Hb_056196_060 Hb_003670_030--Hb_056196_060 Hb_000056_080 Hb_000056_080 Hb_003670_030--Hb_000056_080 Hb_002325_060 Hb_002325_060 Hb_003670_030--Hb_002325_060 Hb_000375_060 Hb_000375_060 Hb_003670_030--Hb_000375_060 Hb_000000_480 Hb_000000_480 Hb_003670_030--Hb_000000_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.406882 21.7511 20.6608 26.5234 0.0565165 0.401097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89639 3.81534 2.65476 15.0694 8.96149

CAGE analysis