Hb_003430_070

Information

Type -
Description -
Location Contig3430: 81857-84038
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20720g
description POPTRDRAFT_659641; Protein phosphatase 2C family protein
nr
ID XP_012088646.1
description PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
swissprot
ID P49598
description Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1
trembl
ID A0A067L908
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01392 PE=3 SV=1
Gene Ontology
ID GO:0004722
description protein phosphatase 2c 37-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35871: 82050-84179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003430_070 0.0 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
2 Hb_000009_150 0.0964236437 - - carbohydrate transporter, putative [Ricinus communis]
3 Hb_006052_060 0.0979649316 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_149484_010 0.1123990468 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
5 Hb_001357_060 0.119843293 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
6 Hb_132840_020 0.119905191 - - PREDICTED: protein LHY [Jatropha curcas]
7 Hb_000329_790 0.1257011534 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
8 Hb_001619_160 0.1265460094 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
9 Hb_005080_020 0.1269332303 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
10 Hb_009476_110 0.1275154635 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
11 Hb_007382_100 0.1277243736 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
12 Hb_178818_010 0.1290062076 - - CRINKLY4 related 3, putative [Theobroma cacao]
13 Hb_048476_040 0.1296216464 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
14 Hb_001318_140 0.1315757203 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
15 Hb_001102_200 0.1328664387 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
16 Hb_005064_070 0.1346607014 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
17 Hb_002343_020 0.1352194185 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
18 Hb_003905_040 0.1359678176 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
19 Hb_172676_010 0.1361322952 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
20 Hb_004032_090 0.1370056422 - - PREDICTED: protein AIG1 [Jatropha curcas]

Gene co-expression network

sample Hb_003430_070 Hb_003430_070 Hb_000009_150 Hb_000009_150 Hb_003430_070--Hb_000009_150 Hb_006052_060 Hb_006052_060 Hb_003430_070--Hb_006052_060 Hb_149484_010 Hb_149484_010 Hb_003430_070--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003430_070--Hb_001357_060 Hb_132840_020 Hb_132840_020 Hb_003430_070--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_003430_070--Hb_000329_790 Hb_001433_160 Hb_001433_160 Hb_000009_150--Hb_001433_160 Hb_005080_020 Hb_005080_020 Hb_000009_150--Hb_005080_020 Hb_004032_090 Hb_004032_090 Hb_000009_150--Hb_004032_090 Hb_000009_150--Hb_000329_790 Hb_048476_040 Hb_048476_040 Hb_000009_150--Hb_048476_040 Hb_001619_160 Hb_001619_160 Hb_006052_060--Hb_001619_160 Hb_001318_140 Hb_001318_140 Hb_006052_060--Hb_001318_140 Hb_172676_010 Hb_172676_010 Hb_006052_060--Hb_172676_010 Hb_006052_060--Hb_149484_010 Hb_001242_190 Hb_001242_190 Hb_006052_060--Hb_001242_190 Hb_003905_040 Hb_003905_040 Hb_149484_010--Hb_003905_040 Hb_005000_050 Hb_005000_050 Hb_149484_010--Hb_005000_050 Hb_000402_030 Hb_000402_030 Hb_149484_010--Hb_000402_030 Hb_005375_070 Hb_005375_070 Hb_149484_010--Hb_005375_070 Hb_002809_120 Hb_002809_120 Hb_001357_060--Hb_002809_120 Hb_001179_010 Hb_001179_010 Hb_001357_060--Hb_001179_010 Hb_002783_140 Hb_002783_140 Hb_001357_060--Hb_002783_140 Hb_001357_060--Hb_003905_040 Hb_000477_110 Hb_000477_110 Hb_001357_060--Hb_000477_110 Hb_000007_440 Hb_000007_440 Hb_001357_060--Hb_000007_440 Hb_001294_050 Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_000086_640 Hb_000086_640 Hb_132840_020--Hb_000086_640 Hb_132840_020--Hb_048476_040 Hb_011381_070 Hb_011381_070 Hb_132840_020--Hb_011381_070 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_132840_020--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_000329_790--Hb_005064_070 Hb_000329_790--Hb_048476_040 Hb_009449_100 Hb_009449_100 Hb_000329_790--Hb_009449_100 Hb_000329_790--Hb_001179_010 Hb_000366_050 Hb_000366_050 Hb_000329_790--Hb_000366_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12158 30.3343 20.246 18.6105 0.106131 1.11244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21607 2.28139 0.875735 10.3302 12.4715

CAGE analysis