Hb_002809_120

Information

Type -
Description -
Location Contig2809: 88394-92528
Sequence    

Annotation

kegg
ID tcc:TCM_031281
description hypothetical protein
nr
ID XP_007021221.1
description Uncharacterized protein TCM_031281 [Theobroma cacao]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A061F6T6
description Uncharacterized protein OS=Theobroma cacao GN=TCM_031281 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_120 0.0 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
2 Hb_001357_060 0.1033462824 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
3 Hb_000260_480 0.1119821486 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
4 Hb_004907_070 0.1193510891 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
5 Hb_000500_230 0.1252871515 - - hypothetical protein RCOM_0634810 [Ricinus communis]
6 Hb_007747_100 0.1257996506 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
7 Hb_005271_180 0.1286925248 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
8 Hb_002783_140 0.1312593094 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
9 Hb_006483_090 0.131289842 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
10 Hb_003905_040 0.133089953 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
11 Hb_000103_410 0.1331534986 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
12 Hb_000477_110 0.1356340075 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
13 Hb_001179_010 0.1361987689 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
14 Hb_001951_230 0.136986841 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
15 Hb_007483_080 0.1370799166 - - hypothetical protein RCOM_0634810 [Ricinus communis]
16 Hb_001689_030 0.1371828873 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
17 Hb_006970_170 0.1389029201 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_000363_250 0.1404232063 - - PREDICTED: pirin-like protein [Malus domestica]
19 Hb_004837_110 0.1420697121 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
20 Hb_000215_290 0.1421808143 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002809_120 Hb_002809_120 Hb_001357_060 Hb_001357_060 Hb_002809_120--Hb_001357_060 Hb_000260_480 Hb_000260_480 Hb_002809_120--Hb_000260_480 Hb_004907_070 Hb_004907_070 Hb_002809_120--Hb_004907_070 Hb_000500_230 Hb_000500_230 Hb_002809_120--Hb_000500_230 Hb_007747_100 Hb_007747_100 Hb_002809_120--Hb_007747_100 Hb_005271_180 Hb_005271_180 Hb_002809_120--Hb_005271_180 Hb_001179_010 Hb_001179_010 Hb_001357_060--Hb_001179_010 Hb_002783_140 Hb_002783_140 Hb_001357_060--Hb_002783_140 Hb_003905_040 Hb_003905_040 Hb_001357_060--Hb_003905_040 Hb_000477_110 Hb_000477_110 Hb_001357_060--Hb_000477_110 Hb_000007_440 Hb_000007_440 Hb_001357_060--Hb_000007_440 Hb_000260_480--Hb_000500_230 Hb_000010_370 Hb_000010_370 Hb_000260_480--Hb_000010_370 Hb_006970_170 Hb_006970_170 Hb_000260_480--Hb_006970_170 Hb_007894_120 Hb_007894_120 Hb_000260_480--Hb_007894_120 Hb_028928_020 Hb_028928_020 Hb_000260_480--Hb_028928_020 Hb_000025_590 Hb_000025_590 Hb_000260_480--Hb_000025_590 Hb_019837_010 Hb_019837_010 Hb_004907_070--Hb_019837_010 Hb_001951_230 Hb_001951_230 Hb_004907_070--Hb_001951_230 Hb_000594_150 Hb_000594_150 Hb_004907_070--Hb_000594_150 Hb_004907_070--Hb_001357_060 Hb_004976_080 Hb_004976_080 Hb_004907_070--Hb_004976_080 Hb_000500_230--Hb_006970_170 Hb_000500_230--Hb_000010_370 Hb_000500_230--Hb_007894_120 Hb_002871_110 Hb_002871_110 Hb_000500_230--Hb_002871_110 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010 Hb_001160_020 Hb_001160_020 Hb_007747_100--Hb_001160_020 Hb_001153_090 Hb_001153_090 Hb_007747_100--Hb_001153_090 Hb_005488_030 Hb_005488_030 Hb_007747_100--Hb_005488_030 Hb_006269_010 Hb_006269_010 Hb_007747_100--Hb_006269_010 Hb_002849_120 Hb_002849_120 Hb_007747_100--Hb_002849_120 Hb_001956_080 Hb_001956_080 Hb_007747_100--Hb_001956_080 Hb_007007_090 Hb_007007_090 Hb_005271_180--Hb_007007_090 Hb_004143_140 Hb_004143_140 Hb_005271_180--Hb_004143_140 Hb_005074_010 Hb_005074_010 Hb_005271_180--Hb_005074_010 Hb_001046_040 Hb_001046_040 Hb_005271_180--Hb_001046_040 Hb_044624_010 Hb_044624_010 Hb_005271_180--Hb_044624_010 Hb_000363_250 Hb_000363_250 Hb_005271_180--Hb_000363_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0105341 2.01752 1.25512 1.13912 0.0816484 0.0184436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0239499 0 0.0713625 0.540068 1.47111

CAGE analysis