Hb_004907_070

Information

Type -
Description -
Location Contig4907: 118063-120418
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20720g
description POPTRDRAFT_659641; Protein phosphatase 2C family protein
nr
ID XP_012088646.1
description PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
swissprot
ID P49598
description Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1
trembl
ID A0A067L908
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01392 PE=3 SV=1
Gene Ontology
ID GO:0044424
description protein phosphatase 2c 37

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45291: 118094-120354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_070 0.0 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
2 Hb_019837_010 0.1133391132 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001951_230 0.1158304332 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
4 Hb_000594_150 0.116928016 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
5 Hb_001357_060 0.1190547597 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
6 Hb_002809_120 0.1193510891 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
7 Hb_004976_080 0.120299082 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
8 Hb_002783_140 0.1228781639 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
9 Hb_000049_290 0.1293835372 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
10 Hb_028285_020 0.1312271941 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
11 Hb_000035_060 0.1340883066 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
12 Hb_064293_010 0.1347068985 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_000260_480 0.1356483292 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
14 Hb_005271_180 0.1372439591 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
15 Hb_001147_030 0.1375366116 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
16 Hb_000500_230 0.138243678 - - hypothetical protein RCOM_0634810 [Ricinus communis]
17 Hb_073171_050 0.1400181773 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
18 Hb_001369_020 0.1415206375 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
19 Hb_004324_220 0.1430449744 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
20 Hb_010180_050 0.1433184835 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004907_070 Hb_004907_070 Hb_019837_010 Hb_019837_010 Hb_004907_070--Hb_019837_010 Hb_001951_230 Hb_001951_230 Hb_004907_070--Hb_001951_230 Hb_000594_150 Hb_000594_150 Hb_004907_070--Hb_000594_150 Hb_001357_060 Hb_001357_060 Hb_004907_070--Hb_001357_060 Hb_002809_120 Hb_002809_120 Hb_004907_070--Hb_002809_120 Hb_004976_080 Hb_004976_080 Hb_004907_070--Hb_004976_080 Hb_019837_010--Hb_004976_080 Hb_019837_010--Hb_000594_150 Hb_000808_260 Hb_000808_260 Hb_019837_010--Hb_000808_260 Hb_000072_240 Hb_000072_240 Hb_019837_010--Hb_000072_240 Hb_002999_130 Hb_002999_130 Hb_019837_010--Hb_002999_130 Hb_000215_290 Hb_000215_290 Hb_001951_230--Hb_000215_290 Hb_000326_080 Hb_000326_080 Hb_001951_230--Hb_000326_080 Hb_000363_250 Hb_000363_250 Hb_001951_230--Hb_000363_250 Hb_005271_180 Hb_005271_180 Hb_001951_230--Hb_005271_180 Hb_001951_230--Hb_001357_060 Hb_000594_150--Hb_000072_240 Hb_000594_150--Hb_004976_080 Hb_000594_150--Hb_002999_130 Hb_010180_050 Hb_010180_050 Hb_000594_150--Hb_010180_050 Hb_001357_060--Hb_002809_120 Hb_001179_010 Hb_001179_010 Hb_001357_060--Hb_001179_010 Hb_002783_140 Hb_002783_140 Hb_001357_060--Hb_002783_140 Hb_003905_040 Hb_003905_040 Hb_001357_060--Hb_003905_040 Hb_000477_110 Hb_000477_110 Hb_001357_060--Hb_000477_110 Hb_000007_440 Hb_000007_440 Hb_001357_060--Hb_000007_440 Hb_000260_480 Hb_000260_480 Hb_002809_120--Hb_000260_480 Hb_000500_230 Hb_000500_230 Hb_002809_120--Hb_000500_230 Hb_007747_100 Hb_007747_100 Hb_002809_120--Hb_007747_100 Hb_002809_120--Hb_005271_180 Hb_004976_080--Hb_000072_240 Hb_000035_060 Hb_000035_060 Hb_004976_080--Hb_000035_060 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11038 113.014 66.67 55.3676 0.460622 2.54892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.35444 2.08467 1.81 19.6288 99.0662

CAGE analysis