Hb_010180_050

Information

Type -
Description -
Location Contig10180: 77776-79824
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14100g
description POPTRDRAFT_254300; calcineurin B-like-interacting protein kinase
nr
ID XP_012089703.1
description PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
swissprot
ID Q7X996
description CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica GN=CIPK2 PE=2 SV=1
trembl
ID A0A067JTC9
description Non-specific serine/threonine protein kinase OS=Jatropha curcas GN=JCGZ_00371 PE=4 SV=1
Gene Ontology
ID GO:0004674
description cbl-interacting protein kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00898: 76880-79806
cDNA
(Sanger)
(ID:Location)		 023_F03.ab1: 76888-78089

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010180_050 0.0 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
2 Hb_000072_240 0.114253723 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
3 Hb_000594_150 0.1176770844 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
4 Hb_002999_130 0.1183887578 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
5 Hb_005054_320 0.1217642025 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
6 Hb_000230_250 0.1257080991 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
7 Hb_003106_240 0.1297871113 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
8 Hb_002030_100 0.1312976157 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
9 Hb_000656_260 0.1315002765 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
10 Hb_011457_080 0.1339406759 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
11 Hb_002211_020 0.1345411869 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
12 Hb_019863_050 0.1375140284 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
13 Hb_000032_590 0.1380847182 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
14 Hb_004907_070 0.1433184835 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
15 Hb_003970_010 0.1433535905 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
16 Hb_003579_010 0.1444593661 - - cryptochrome 1.2 [Populus tremula]
17 Hb_000110_040 0.1453918439 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
18 Hb_000049_290 0.1456935443 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
19 Hb_000167_100 0.1498916934 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_004800_140 0.1504543573 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010180_050 Hb_010180_050 Hb_000072_240 Hb_000072_240 Hb_010180_050--Hb_000072_240 Hb_000594_150 Hb_000594_150 Hb_010180_050--Hb_000594_150 Hb_002999_130 Hb_002999_130 Hb_010180_050--Hb_002999_130 Hb_005054_320 Hb_005054_320 Hb_010180_050--Hb_005054_320 Hb_000230_250 Hb_000230_250 Hb_010180_050--Hb_000230_250 Hb_003106_240 Hb_003106_240 Hb_010180_050--Hb_003106_240 Hb_000072_240--Hb_000594_150 Hb_004976_080 Hb_004976_080 Hb_000072_240--Hb_004976_080 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_003126_010 Hb_003126_010 Hb_000072_240--Hb_003126_010 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020 Hb_000594_150--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000594_150--Hb_019837_010 Hb_000594_150--Hb_002999_130 Hb_004907_070 Hb_004907_070 Hb_000594_150--Hb_004907_070 Hb_073171_050 Hb_073171_050 Hb_002999_130--Hb_073171_050 Hb_000656_260 Hb_000656_260 Hb_002999_130--Hb_000656_260 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_001369_020 Hb_001369_020 Hb_002999_130--Hb_001369_020 Hb_004007_210 Hb_004007_210 Hb_005054_320--Hb_004007_210 Hb_010055_020 Hb_010055_020 Hb_005054_320--Hb_010055_020 Hb_019026_040 Hb_019026_040 Hb_005054_320--Hb_019026_040 Hb_183025_010 Hb_183025_010 Hb_005054_320--Hb_183025_010 Hb_000049_290 Hb_000049_290 Hb_005054_320--Hb_000049_290 Hb_004880_120 Hb_004880_120 Hb_000230_250--Hb_004880_120 Hb_005772_020 Hb_005772_020 Hb_000230_250--Hb_005772_020 Hb_010175_050 Hb_010175_050 Hb_000230_250--Hb_010175_050 Hb_000230_250--Hb_004007_210 Hb_000032_590 Hb_000032_590 Hb_000230_250--Hb_000032_590 Hb_011457_080 Hb_011457_080 Hb_003106_240--Hb_011457_080 Hb_004218_080 Hb_004218_080 Hb_003106_240--Hb_004218_080 Hb_027402_100 Hb_027402_100 Hb_003106_240--Hb_027402_100 Hb_000035_060 Hb_000035_060 Hb_003106_240--Hb_000035_060 Hb_007193_030 Hb_007193_030 Hb_003106_240--Hb_007193_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68064 82.3752 65.8027 27.4095 2.16266 1.48001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.662024 1.06039 0.493316 3.87241 83.0079

CAGE analysis