Hb_010055_020

Information

Type -
Description -
Location Contig10055: 36350-40001
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00970g
description POPTRDRAFT_803073; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012066149.1
description PREDICTED: receptor-like protein kinase [Jatropha curcas]
swissprot
ID P93194
description Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2
trembl
ID A0A067LFT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00533 PE=4 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00373: 36270-36461 , PASA_asmbl_00375: 37179-37647 , PASA_asmbl_00376: 38186-38422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010055_020 0.0 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
2 Hb_000363_050 0.1073429947 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
3 Hb_000002_090 0.1344692387 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
4 Hb_002871_170 0.1369983643 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
5 Hb_005054_320 0.1375470982 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
6 Hb_034013_010 0.1417479731 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
7 Hb_004884_210 0.1456120042 - - PREDICTED: mitoferrin-like [Jatropha curcas]
8 Hb_004143_140 0.146562993 - - glycosyltransferase, partial [Arabidopsis thaliana]
9 Hb_000112_040 0.1504943496 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_000015_230 0.1560859651 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
11 Hb_002006_060 0.1561546071 - - PREDICTED: oleosin 1-like [Jatropha curcas]
12 Hb_004907_070 0.1564644746 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
13 Hb_044624_010 0.1565328379 - - -
14 Hb_000049_290 0.1577092007 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
15 Hb_001989_080 0.1583889692 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_006618_020 0.1634219225 - - Vacuolar-processing enzyme precursor [Ricinus communis]
17 Hb_171900_110 0.1641969473 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
18 Hb_004324_220 0.1648474225 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
19 Hb_115114_010 0.1664920198 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003579_010 0.1675179052 - - cryptochrome 1.2 [Populus tremula]

Gene co-expression network

sample Hb_010055_020 Hb_010055_020 Hb_000363_050 Hb_000363_050 Hb_010055_020--Hb_000363_050 Hb_000002_090 Hb_000002_090 Hb_010055_020--Hb_000002_090 Hb_002871_170 Hb_002871_170 Hb_010055_020--Hb_002871_170 Hb_005054_320 Hb_005054_320 Hb_010055_020--Hb_005054_320 Hb_034013_010 Hb_034013_010 Hb_010055_020--Hb_034013_010 Hb_004884_210 Hb_004884_210 Hb_010055_020--Hb_004884_210 Hb_000049_290 Hb_000049_290 Hb_000363_050--Hb_000049_290 Hb_003517_090 Hb_003517_090 Hb_000363_050--Hb_003517_090 Hb_022487_010 Hb_022487_010 Hb_000363_050--Hb_022487_010 Hb_004324_220 Hb_004324_220 Hb_000363_050--Hb_004324_220 Hb_004143_140 Hb_004143_140 Hb_000363_050--Hb_004143_140 Hb_107552_020 Hb_107552_020 Hb_000002_090--Hb_107552_020 Hb_000002_090--Hb_002871_170 Hb_000002_090--Hb_034013_010 Hb_001989_080 Hb_001989_080 Hb_000002_090--Hb_001989_080 Hb_030370_070 Hb_030370_070 Hb_000002_090--Hb_030370_070 Hb_000112_040 Hb_000112_040 Hb_002871_170--Hb_000112_040 Hb_002871_170--Hb_034013_010 Hb_171900_110 Hb_171900_110 Hb_002871_170--Hb_171900_110 Hb_002871_170--Hb_001989_080 Hb_002871_170--Hb_107552_020 Hb_010180_050 Hb_010180_050 Hb_005054_320--Hb_010180_050 Hb_004007_210 Hb_004007_210 Hb_005054_320--Hb_004007_210 Hb_019026_040 Hb_019026_040 Hb_005054_320--Hb_019026_040 Hb_183025_010 Hb_183025_010 Hb_005054_320--Hb_183025_010 Hb_005054_320--Hb_000049_290 Hb_034013_010--Hb_004884_210 Hb_034013_010--Hb_001989_080 Hb_034013_010--Hb_000112_040 Hb_003106_250 Hb_003106_250 Hb_004884_210--Hb_003106_250 Hb_172426_010 Hb_172426_010 Hb_004884_210--Hb_172426_010 Hb_001205_170 Hb_001205_170 Hb_004884_210--Hb_001205_170 Hb_004884_210--Hb_000363_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.458858 16.3043 4.14026 4.20114 0.0266054 0.587032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0866006 0.00973577 0.0373341 1.59735 12.5158

CAGE analysis