Hb_000002_090

Information

Type -
Description -
Location Contig2: 138245-142923
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24160g
description POPTRDRAFT_1093028; hypothetical protein
nr
ID XP_012089869.1
description PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
swissprot
ID Q9M0R5
description Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana GN=ATL36 PE=3 SV=1
trembl
ID A0A067L976
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01516 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_090 0.0 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
2 Hb_010055_020 0.1344692387 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
3 Hb_107552_020 0.1466551441 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
4 Hb_002871_170 0.1480608509 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
5 Hb_034013_010 0.1532504583 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
6 Hb_001989_080 0.1565264827 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_030370_070 0.1651024098 - - ATP binding protein, putative [Ricinus communis]
8 Hb_015882_020 0.1657849589 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
9 Hb_001534_150 0.1701488539 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
10 Hb_008253_040 0.1769171594 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_009247_030 0.1796849069 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_019026_040 0.1803536605 - - S-locus lectin protein kinase family protein [Theobroma cacao]
13 Hb_005054_320 0.182781709 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
14 Hb_000347_380 0.1831849013 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_004143_140 0.1835279255 - - glycosyltransferase, partial [Arabidopsis thaliana]
16 Hb_000313_100 0.1850937063 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
17 Hb_175670_010 0.1871669649 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_004945_050 0.1877564422 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
19 Hb_033312_090 0.1878854128 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
20 Hb_002341_040 0.188919359 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000002_090 Hb_000002_090 Hb_010055_020 Hb_010055_020 Hb_000002_090--Hb_010055_020 Hb_107552_020 Hb_107552_020 Hb_000002_090--Hb_107552_020 Hb_002871_170 Hb_002871_170 Hb_000002_090--Hb_002871_170 Hb_034013_010 Hb_034013_010 Hb_000002_090--Hb_034013_010 Hb_001989_080 Hb_001989_080 Hb_000002_090--Hb_001989_080 Hb_030370_070 Hb_030370_070 Hb_000002_090--Hb_030370_070 Hb_000363_050 Hb_000363_050 Hb_010055_020--Hb_000363_050 Hb_010055_020--Hb_002871_170 Hb_005054_320 Hb_005054_320 Hb_010055_020--Hb_005054_320 Hb_010055_020--Hb_034013_010 Hb_004884_210 Hb_004884_210 Hb_010055_020--Hb_004884_210 Hb_000347_380 Hb_000347_380 Hb_107552_020--Hb_000347_380 Hb_001534_150 Hb_001534_150 Hb_107552_020--Hb_001534_150 Hb_019026_040 Hb_019026_040 Hb_107552_020--Hb_019026_040 Hb_003811_030 Hb_003811_030 Hb_107552_020--Hb_003811_030 Hb_107552_020--Hb_030370_070 Hb_000027_060 Hb_000027_060 Hb_107552_020--Hb_000027_060 Hb_000112_040 Hb_000112_040 Hb_002871_170--Hb_000112_040 Hb_002871_170--Hb_034013_010 Hb_171900_110 Hb_171900_110 Hb_002871_170--Hb_171900_110 Hb_002871_170--Hb_001989_080 Hb_002871_170--Hb_107552_020 Hb_034013_010--Hb_004884_210 Hb_034013_010--Hb_001989_080 Hb_034013_010--Hb_000112_040 Hb_027474_010 Hb_027474_010 Hb_001989_080--Hb_027474_010 Hb_004143_140 Hb_004143_140 Hb_001989_080--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_001989_080--Hb_000044_050 Hb_001046_040 Hb_001046_040 Hb_001989_080--Hb_001046_040 Hb_001989_080--Hb_030370_070 Hb_044624_010 Hb_044624_010 Hb_001989_080--Hb_044624_010 Hb_000029_180 Hb_000029_180 Hb_030370_070--Hb_000029_180 Hb_030370_070--Hb_001534_150 Hb_000465_380 Hb_000465_380 Hb_030370_070--Hb_000465_380 Hb_008550_030 Hb_008550_030 Hb_030370_070--Hb_008550_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.15362 0.215141 0.189657 0 0.068383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.085711 0.548843

CAGE analysis