Hb_002871_170

Information

Type transcription factor
Description TF Family: NAC
Location Contig2871: 288748-292726
Sequence    

Annotation

kegg
ID rcu:RCOM_0565330
description NAC domain-containing protein 21/22, putative
nr
ID XP_002529954.1
description NAC domain-containing protein 21/22, putative [Ricinus communis]
swissprot
ID Q84TE6
description NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2
trembl
ID B9SVD5
description NAC domain-containing protein 21/22, putative OS=Ricinus communis GN=RCOM_0565330 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 21 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29953: 291274-292435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002871_170 0.0 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
2 Hb_000112_040 0.0811956937 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_034013_010 0.1201212892 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
4 Hb_171900_110 0.124191903 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
5 Hb_001989_080 0.1303409803 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_107552_020 0.1363644881 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
7 Hb_010055_020 0.1369983643 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
8 Hb_000331_220 0.1440045575 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000313_100 0.1475092565 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
10 Hb_000002_090 0.1480608509 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
11 Hb_019026_040 0.1488765229 - - S-locus lectin protein kinase family protein [Theobroma cacao]
12 Hb_004143_140 0.1489267976 - - glycosyltransferase, partial [Arabidopsis thaliana]
13 Hb_000044_050 0.1501856875 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
14 Hb_000363_050 0.151976852 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
15 Hb_175670_010 0.1540938541 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_044624_010 0.1543390258 - - -
17 Hb_000032_590 0.1594667728 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
18 Hb_004884_210 0.1615977051 - - PREDICTED: mitoferrin-like [Jatropha curcas]
19 Hb_004994_200 0.1630345412 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
20 Hb_004324_220 0.1636895339 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]

Gene co-expression network

sample Hb_002871_170 Hb_002871_170 Hb_000112_040 Hb_000112_040 Hb_002871_170--Hb_000112_040 Hb_034013_010 Hb_034013_010 Hb_002871_170--Hb_034013_010 Hb_171900_110 Hb_171900_110 Hb_002871_170--Hb_171900_110 Hb_001989_080 Hb_001989_080 Hb_002871_170--Hb_001989_080 Hb_107552_020 Hb_107552_020 Hb_002871_170--Hb_107552_020 Hb_010055_020 Hb_010055_020 Hb_002871_170--Hb_010055_020 Hb_000331_220 Hb_000331_220 Hb_000112_040--Hb_000331_220 Hb_000112_040--Hb_171900_110 Hb_000049_290 Hb_000049_290 Hb_000112_040--Hb_000049_290 Hb_071130_020 Hb_071130_020 Hb_000112_040--Hb_071130_020 Hb_000032_590 Hb_000032_590 Hb_000112_040--Hb_000032_590 Hb_004884_210 Hb_004884_210 Hb_034013_010--Hb_004884_210 Hb_034013_010--Hb_010055_020 Hb_000002_090 Hb_000002_090 Hb_034013_010--Hb_000002_090 Hb_034013_010--Hb_001989_080 Hb_034013_010--Hb_000112_040 Hb_171900_110--Hb_000032_590 Hb_005240_010 Hb_005240_010 Hb_171900_110--Hb_005240_010 Hb_000780_160 Hb_000780_160 Hb_171900_110--Hb_000780_160 Hb_000039_120 Hb_000039_120 Hb_171900_110--Hb_000039_120 Hb_004126_050 Hb_004126_050 Hb_171900_110--Hb_004126_050 Hb_027474_010 Hb_027474_010 Hb_001989_080--Hb_027474_010 Hb_004143_140 Hb_004143_140 Hb_001989_080--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_001989_080--Hb_000044_050 Hb_001046_040 Hb_001046_040 Hb_001989_080--Hb_001046_040 Hb_030370_070 Hb_030370_070 Hb_001989_080--Hb_030370_070 Hb_044624_010 Hb_044624_010 Hb_001989_080--Hb_044624_010 Hb_000347_380 Hb_000347_380 Hb_107552_020--Hb_000347_380 Hb_001534_150 Hb_001534_150 Hb_107552_020--Hb_001534_150 Hb_019026_040 Hb_019026_040 Hb_107552_020--Hb_019026_040 Hb_003811_030 Hb_003811_030 Hb_107552_020--Hb_003811_030 Hb_107552_020--Hb_030370_070 Hb_000027_060 Hb_000027_060 Hb_107552_020--Hb_000027_060 Hb_000363_050 Hb_000363_050 Hb_010055_020--Hb_000363_050 Hb_010055_020--Hb_000002_090 Hb_005054_320 Hb_005054_320 Hb_010055_020--Hb_005054_320 Hb_010055_020--Hb_004884_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.18685 0.266451 0.183142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.115164 0.865828

CAGE analysis