Hb_003811_030

Information

Type -
Description -
Location Contig3811: 38476-56984
Sequence    

Annotation

kegg
ID fve:101299142
description LRR receptor-like serine/threonine-protein kinase EFR-like
nr
ID KDP44807.1
description hypothetical protein JCGZ_01307 [Jatropha curcas]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A067L8U0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01307 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003811_030 0.0 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
2 Hb_006873_030 0.1034136717 - - receptor serine/threonine kinase, putative [Ricinus communis]
3 Hb_019026_040 0.1047137155 - - S-locus lectin protein kinase family protein [Theobroma cacao]
4 Hb_107552_020 0.1128075405 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
5 Hb_003929_040 0.113288766 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
6 Hb_036492_020 0.1177538644 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
7 Hb_010175_050 0.122256729 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
8 Hb_000402_180 0.1233024029 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
9 Hb_097007_020 0.1306655443 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
10 Hb_035677_010 0.1318010009 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000247_150 0.1358393822 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
12 Hb_010091_030 0.1363164614 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_006907_020 0.1370336774 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
14 Hb_004899_360 0.1423695133 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_039650_030 0.1436725654 - - hypothetical protein RCOM_2128750 [Ricinus communis]
16 Hb_000347_380 0.1464554876 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_134022_010 0.1486839878 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
18 Hb_008341_010 0.1506729729 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
19 Hb_012496_010 0.1519384617 - - kinase, putative [Ricinus communis]
20 Hb_004880_100 0.1533137961 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]

Gene co-expression network

sample Hb_003811_030 Hb_003811_030 Hb_006873_030 Hb_006873_030 Hb_003811_030--Hb_006873_030 Hb_019026_040 Hb_019026_040 Hb_003811_030--Hb_019026_040 Hb_107552_020 Hb_107552_020 Hb_003811_030--Hb_107552_020 Hb_003929_040 Hb_003929_040 Hb_003811_030--Hb_003929_040 Hb_036492_020 Hb_036492_020 Hb_003811_030--Hb_036492_020 Hb_010175_050 Hb_010175_050 Hb_003811_030--Hb_010175_050 Hb_012496_010 Hb_012496_010 Hb_006873_030--Hb_012496_010 Hb_039650_030 Hb_039650_030 Hb_006873_030--Hb_039650_030 Hb_113396_020 Hb_113396_020 Hb_006873_030--Hb_113396_020 Hb_035677_010 Hb_035677_010 Hb_006873_030--Hb_035677_010 Hb_000247_150 Hb_000247_150 Hb_006873_030--Hb_000247_150 Hb_019026_040--Hb_107552_020 Hb_019026_040--Hb_010175_050 Hb_000347_380 Hb_000347_380 Hb_019026_040--Hb_000347_380 Hb_019026_040--Hb_036492_020 Hb_004007_210 Hb_004007_210 Hb_019026_040--Hb_004007_210 Hb_107552_020--Hb_000347_380 Hb_001534_150 Hb_001534_150 Hb_107552_020--Hb_001534_150 Hb_030370_070 Hb_030370_070 Hb_107552_020--Hb_030370_070 Hb_000027_060 Hb_000027_060 Hb_107552_020--Hb_000027_060 Hb_000402_180 Hb_000402_180 Hb_003929_040--Hb_000402_180 Hb_003929_040--Hb_036492_020 Hb_006358_030 Hb_006358_030 Hb_003929_040--Hb_006358_030 Hb_070613_010 Hb_070613_010 Hb_003929_040--Hb_070613_010 Hb_134022_010 Hb_134022_010 Hb_003929_040--Hb_134022_010 Hb_036492_020--Hb_006358_030 Hb_036492_020--Hb_000402_180 Hb_000656_260 Hb_000656_260 Hb_036492_020--Hb_000656_260 Hb_036492_020--Hb_134022_010 Hb_152414_010 Hb_152414_010 Hb_036492_020--Hb_152414_010 Hb_008341_010 Hb_008341_010 Hb_010175_050--Hb_008341_010 Hb_005772_020 Hb_005772_020 Hb_010175_050--Hb_005772_020 Hb_004241_170 Hb_004241_170 Hb_010175_050--Hb_004241_170 Hb_000230_250 Hb_000230_250 Hb_010175_050--Hb_000230_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.414311 0.173331 0.0528973 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0118336 0.12832

CAGE analysis