Hb_000230_250

Information

Type -
Description -
Location Contig230: 251799-259314
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000892mg
description hypothetical protein
nr
ID XP_012069460.1
description PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
swissprot
ID Q42910
description Pyruvate, phosphate dikinase, chloroplastic OS=Mesembryanthemum crystallinum GN=PPD PE=2 SV=1
trembl
ID A0A067KV17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02059 PE=4 SV=1
Gene Ontology
ID GO:0005524
description phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24016: 251818-252937 , PASA_asmbl_24017: 253601-254467 , PASA_asmbl_24018: 255396-257590 , PASA_asmbl_24019: 257592-259294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_250 0.0 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
2 Hb_004880_120 0.11692421 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
3 Hb_005772_020 0.123397187 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_010175_050 0.1238244548 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
5 Hb_010180_050 0.1257080991 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
6 Hb_004007_210 0.1310332009 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
7 Hb_000032_590 0.1341702538 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
8 Hb_005240_010 0.1457498521 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
9 Hb_000160_080 0.1529575178 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM2b-like [Jatropha curcas]
10 Hb_004800_140 0.153479201 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
11 Hb_171900_110 0.1549468194 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
12 Hb_005054_320 0.156258474 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
13 Hb_000072_240 0.1583937231 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
14 Hb_008341_010 0.1617320521 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
15 Hb_002211_020 0.1649002796 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
16 Hb_011457_080 0.1668449621 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
17 Hb_019026_040 0.1726290194 - - S-locus lectin protein kinase family protein [Theobroma cacao]
18 Hb_006358_030 0.1733718082 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
19 Hb_002030_100 0.1756631488 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
20 Hb_004241_170 0.1757795064 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_250 Hb_000230_250 Hb_004880_120 Hb_004880_120 Hb_000230_250--Hb_004880_120 Hb_005772_020 Hb_005772_020 Hb_000230_250--Hb_005772_020 Hb_010175_050 Hb_010175_050 Hb_000230_250--Hb_010175_050 Hb_010180_050 Hb_010180_050 Hb_000230_250--Hb_010180_050 Hb_004007_210 Hb_004007_210 Hb_000230_250--Hb_004007_210 Hb_000032_590 Hb_000032_590 Hb_000230_250--Hb_000032_590 Hb_137701_020 Hb_137701_020 Hb_004880_120--Hb_137701_020 Hb_004880_120--Hb_010175_050 Hb_063869_010 Hb_063869_010 Hb_004880_120--Hb_063869_010 Hb_004880_120--Hb_005772_020 Hb_004880_120--Hb_004007_210 Hb_005240_010 Hb_005240_010 Hb_005772_020--Hb_005240_010 Hb_005772_020--Hb_000032_590 Hb_006358_030 Hb_006358_030 Hb_005772_020--Hb_006358_030 Hb_005772_020--Hb_010175_050 Hb_171900_110 Hb_171900_110 Hb_005772_020--Hb_171900_110 Hb_008341_010 Hb_008341_010 Hb_010175_050--Hb_008341_010 Hb_019026_040 Hb_019026_040 Hb_010175_050--Hb_019026_040 Hb_004241_170 Hb_004241_170 Hb_010175_050--Hb_004241_170 Hb_003811_030 Hb_003811_030 Hb_010175_050--Hb_003811_030 Hb_000072_240 Hb_000072_240 Hb_010180_050--Hb_000072_240 Hb_000594_150 Hb_000594_150 Hb_010180_050--Hb_000594_150 Hb_002999_130 Hb_002999_130 Hb_010180_050--Hb_002999_130 Hb_005054_320 Hb_005054_320 Hb_010180_050--Hb_005054_320 Hb_003106_240 Hb_003106_240 Hb_010180_050--Hb_003106_240 Hb_004007_210--Hb_019026_040 Hb_004007_210--Hb_005054_320 Hb_004007_210--Hb_010175_050 Hb_004007_210--Hb_005772_020 Hb_000032_590--Hb_171900_110 Hb_000032_590--Hb_006358_030 Hb_000032_590--Hb_005240_010 Hb_115114_010 Hb_115114_010 Hb_000032_590--Hb_115114_010 Hb_132259_010 Hb_132259_010 Hb_000032_590--Hb_132259_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0475539 9.52073 6.12639 1.11434 0.0864326 0.0405442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.058108 0.102885 0.0656021 0.158695 9.36574

CAGE analysis