Hb_171900_110

Information

Type transcription factor
Description TF Family: HB
Location Contig171900: 39909-41707
Sequence    

Annotation

kegg
ID rcu:RCOM_1608820
description homeobox protein, putative
nr
ID XP_011031821.1
description PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
swissprot
ID P46602
description Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2
trembl
ID B9RD19
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_1608820 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_110 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
2 Hb_000032_590 0.0731499281 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
3 Hb_005240_010 0.0792683376 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
4 Hb_000780_160 0.0898785403 - - hypothetical protein RCOM_0483300 [Ricinus communis]
5 Hb_000112_040 0.1043413393 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
6 Hb_000039_120 0.1134105578 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_004126_050 0.1207945028 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]
8 Hb_005772_020 0.1212990112 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
9 Hb_002871_170 0.124191903 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
10 Hb_132259_010 0.1284133406 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
11 Hb_006243_010 0.1294344145 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
12 Hb_115114_010 0.1344221015 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006358_030 0.1409505174 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
14 Hb_002211_020 0.1427064705 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
15 Hb_022487_010 0.1456679433 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
16 Hb_000311_110 0.1457297463 - - ATP-binding cassette transporter, putative [Ricinus communis]
17 Hb_000049_290 0.1478558644 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
18 Hb_001999_050 0.1501229354 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
19 Hb_000331_220 0.151545791 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000230_250 0.1549468194 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_171900_110 Hb_171900_110 Hb_000032_590 Hb_000032_590 Hb_171900_110--Hb_000032_590 Hb_005240_010 Hb_005240_010 Hb_171900_110--Hb_005240_010 Hb_000780_160 Hb_000780_160 Hb_171900_110--Hb_000780_160 Hb_000112_040 Hb_000112_040 Hb_171900_110--Hb_000112_040 Hb_000039_120 Hb_000039_120 Hb_171900_110--Hb_000039_120 Hb_004126_050 Hb_004126_050 Hb_171900_110--Hb_004126_050 Hb_006358_030 Hb_006358_030 Hb_000032_590--Hb_006358_030 Hb_000032_590--Hb_005240_010 Hb_005772_020 Hb_005772_020 Hb_000032_590--Hb_005772_020 Hb_115114_010 Hb_115114_010 Hb_000032_590--Hb_115114_010 Hb_132259_010 Hb_132259_010 Hb_000032_590--Hb_132259_010 Hb_005240_010--Hb_005772_020 Hb_005240_010--Hb_004126_050 Hb_005240_010--Hb_000780_160 Hb_005240_010--Hb_006358_030 Hb_000780_160--Hb_004126_050 Hb_006243_010 Hb_006243_010 Hb_000780_160--Hb_006243_010 Hb_000780_160--Hb_000039_120 Hb_000780_160--Hb_000032_590 Hb_019863_050 Hb_019863_050 Hb_000780_160--Hb_019863_050 Hb_000331_220 Hb_000331_220 Hb_000112_040--Hb_000331_220 Hb_002871_170 Hb_002871_170 Hb_000112_040--Hb_002871_170 Hb_000049_290 Hb_000049_290 Hb_000112_040--Hb_000049_290 Hb_071130_020 Hb_071130_020 Hb_000112_040--Hb_071130_020 Hb_000112_040--Hb_000032_590 Hb_000039_120--Hb_000032_590 Hb_000311_110 Hb_000311_110 Hb_000039_120--Hb_000311_110 Hb_001999_050 Hb_001999_050 Hb_000039_120--Hb_001999_050 Hb_000039_120--Hb_004126_050 Hb_004126_050--Hb_006243_010 Hb_005337_140 Hb_005337_140 Hb_004126_050--Hb_005337_140 Hb_000061_440 Hb_000061_440 Hb_004126_050--Hb_000061_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.623738 0.233751 0.155836 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0184377 0.64917

CAGE analysis