Hb_001999_050

Information

Type rubber biosynthesis
Description Gene Name: CPT7
Location Contig1999: 103611-105323
Sequence    

Annotation

kegg
ID rcu:RCOM_0612090
description undecaprenyl pyrophosphate synthetase, putative (EC:2.5.1.31)
nr
ID XP_012067662.1
description PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
swissprot
ID Q56Y11
description Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2
trembl
ID A0A067LGM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08475 PE=3 SV=1
Gene Ontology
ID GO:0008834
description dehydrodolichyl diphosphate synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20023: 103752-103950 , PASA_asmbl_20024: 104132-105222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_050 0.0 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
2 Hb_000311_110 0.0793307907 - - ATP-binding cassette transporter, putative [Ricinus communis]
3 Hb_018105_010 0.1146749129 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
4 Hb_001205_170 0.1280427046 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
5 Hb_119832_010 0.135487724 - - -
6 Hb_000039_120 0.143439546 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_171900_110 0.1501229354 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
8 Hb_009393_110 0.1507466685 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
9 Hb_004884_210 0.155343052 - - PREDICTED: mitoferrin-like [Jatropha curcas]
10 Hb_000780_160 0.1574324067 - - hypothetical protein RCOM_0483300 [Ricinus communis]
11 Hb_008225_020 0.1626780868 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
12 Hb_004994_200 0.1724715483 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
13 Hb_034013_010 0.1753871726 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
14 Hb_000289_090 0.1756465193 - - -
15 Hb_004372_050 0.1811903627 - - putative receptor-like protein kinase [Morus notabilis]
16 Hb_005240_010 0.1846768365 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
17 Hb_002871_170 0.1859358584 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
18 Hb_004951_030 0.1872196885 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
19 Hb_000112_040 0.1874582075 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_172426_010 0.1888410991 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]

Gene co-expression network

sample Hb_001999_050 Hb_001999_050 Hb_000311_110 Hb_000311_110 Hb_001999_050--Hb_000311_110 Hb_018105_010 Hb_018105_010 Hb_001999_050--Hb_018105_010 Hb_001205_170 Hb_001205_170 Hb_001999_050--Hb_001205_170 Hb_119832_010 Hb_119832_010 Hb_001999_050--Hb_119832_010 Hb_000039_120 Hb_000039_120 Hb_001999_050--Hb_000039_120 Hb_171900_110 Hb_171900_110 Hb_001999_050--Hb_171900_110 Hb_000311_110--Hb_119832_010 Hb_000311_110--Hb_018105_010 Hb_009393_110 Hb_009393_110 Hb_000311_110--Hb_009393_110 Hb_003440_080 Hb_003440_080 Hb_000311_110--Hb_003440_080 Hb_000780_160 Hb_000780_160 Hb_000311_110--Hb_000780_160 Hb_004951_030 Hb_004951_030 Hb_018105_010--Hb_004951_030 Hb_018105_010--Hb_009393_110 Hb_018105_010--Hb_119832_010 Hb_004643_020 Hb_004643_020 Hb_018105_010--Hb_004643_020 Hb_004884_210 Hb_004884_210 Hb_001205_170--Hb_004884_210 Hb_007575_020 Hb_007575_020 Hb_001205_170--Hb_007575_020 Hb_172426_010 Hb_172426_010 Hb_001205_170--Hb_172426_010 Hb_027337_050 Hb_027337_050 Hb_001205_170--Hb_027337_050 Hb_034013_010 Hb_034013_010 Hb_001205_170--Hb_034013_010 Hb_119832_010--Hb_009393_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_119832_010--Hb_004951_030 Hb_119832_010--Hb_003440_080 Hb_003796_010 Hb_003796_010 Hb_119832_010--Hb_003796_010 Hb_000039_120--Hb_171900_110 Hb_000039_120--Hb_000780_160 Hb_000032_590 Hb_000032_590 Hb_000039_120--Hb_000032_590 Hb_000039_120--Hb_000311_110 Hb_004126_050 Hb_004126_050 Hb_000039_120--Hb_004126_050 Hb_171900_110--Hb_000032_590 Hb_005240_010 Hb_005240_010 Hb_171900_110--Hb_005240_010 Hb_171900_110--Hb_000780_160 Hb_000112_040 Hb_000112_040 Hb_171900_110--Hb_000112_040 Hb_171900_110--Hb_004126_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.023918 2.24492 0.422949 0.46284 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0548427 0 0 0.069491 3.2493

CAGE analysis