Hb_004884_210

Information

Type -
Description -
Location Contig4884: 165816-166862
Sequence    

Annotation

kegg
ID rcu:RCOM_0847690
description mitochondrial carrier protein, putative
nr
ID XP_012089783.1
description PREDICTED: mitoferrin-like [Jatropha curcas]
swissprot
ID Q55DY8
description Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1
trembl
ID A0A067JG73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00424 PE=3 SV=1
Gene Ontology
ID GO:0005743
description mitoferrin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45159: 165831-166993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_210 0.0 - - PREDICTED: mitoferrin-like [Jatropha curcas]
2 Hb_003106_250 0.1108592831 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
3 Hb_034013_010 0.1372274375 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
4 Hb_010055_020 0.1456120042 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
5 Hb_172426_010 0.1487179806 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
6 Hb_001205_170 0.1500790459 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
7 Hb_000363_050 0.153781875 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
8 Hb_001999_050 0.155343052 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
9 Hb_002871_170 0.1615977051 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
10 Hb_000112_040 0.1636592436 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_000311_110 0.1648059982 - - ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_171900_110 0.169928076 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
13 Hb_004007_210 0.1721267141 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
14 Hb_004994_200 0.1825629425 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
15 Hb_005054_320 0.1854982405 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
16 Hb_042463_050 0.1856421787 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001405_230 0.1893328022 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
18 Hb_000039_120 0.189785344 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
19 Hb_000230_250 0.1914990985 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
20 Hb_011472_050 0.1933626703 - - -

Gene co-expression network

sample Hb_004884_210 Hb_004884_210 Hb_003106_250 Hb_003106_250 Hb_004884_210--Hb_003106_250 Hb_034013_010 Hb_034013_010 Hb_004884_210--Hb_034013_010 Hb_010055_020 Hb_010055_020 Hb_004884_210--Hb_010055_020 Hb_172426_010 Hb_172426_010 Hb_004884_210--Hb_172426_010 Hb_001205_170 Hb_001205_170 Hb_004884_210--Hb_001205_170 Hb_000363_050 Hb_000363_050 Hb_004884_210--Hb_000363_050 Hb_001229_030 Hb_001229_030 Hb_003106_250--Hb_001229_030 Hb_004976_080 Hb_004976_080 Hb_003106_250--Hb_004976_080 Hb_001405_230 Hb_001405_230 Hb_003106_250--Hb_001405_230 Hb_011472_050 Hb_011472_050 Hb_003106_250--Hb_011472_050 Hb_000072_240 Hb_000072_240 Hb_003106_250--Hb_000072_240 Hb_002871_170 Hb_002871_170 Hb_034013_010--Hb_002871_170 Hb_034013_010--Hb_010055_020 Hb_000002_090 Hb_000002_090 Hb_034013_010--Hb_000002_090 Hb_001989_080 Hb_001989_080 Hb_034013_010--Hb_001989_080 Hb_000112_040 Hb_000112_040 Hb_034013_010--Hb_000112_040 Hb_010055_020--Hb_000363_050 Hb_010055_020--Hb_000002_090 Hb_010055_020--Hb_002871_170 Hb_005054_320 Hb_005054_320 Hb_010055_020--Hb_005054_320 Hb_000417_150 Hb_000417_150 Hb_172426_010--Hb_000417_150 Hb_004994_200 Hb_004994_200 Hb_172426_010--Hb_004994_200 Hb_000236_430 Hb_000236_430 Hb_172426_010--Hb_000236_430 Hb_027337_050 Hb_027337_050 Hb_172426_010--Hb_027337_050 Hb_172426_010--Hb_001205_170 Hb_001999_050 Hb_001999_050 Hb_001205_170--Hb_001999_050 Hb_007575_020 Hb_007575_020 Hb_001205_170--Hb_007575_020 Hb_001205_170--Hb_027337_050 Hb_001205_170--Hb_034013_010 Hb_000049_290 Hb_000049_290 Hb_000363_050--Hb_000049_290 Hb_003517_090 Hb_003517_090 Hb_000363_050--Hb_003517_090 Hb_022487_010 Hb_022487_010 Hb_000363_050--Hb_022487_010 Hb_004324_220 Hb_004324_220 Hb_000363_050--Hb_004324_220 Hb_004143_140 Hb_004143_140 Hb_000363_050--Hb_004143_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.316943 15.2534 3.71208 2.11338 0.68581 0.244378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107512 0.0422768 0.0775669 1.12343 16.4616

CAGE analysis