Hb_001229_030

Information

Type -
Description -
Location Contig1229: 30256-33137
Sequence    

Annotation

kegg
ID sita:101768429
description uncharacterized LOC101768429
nr
ID XP_010507136.1
description PREDICTED: uncharacterized protein LOC104783713 [Camelina sativa]
swissprot
ID P10394
description Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1
trembl
ID F1C3E6
description Putative uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0043170
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06943: 33707-34047
cDNA
(Sanger)
(ID:Location)		 007_F19.ab1: 33707-34044 , 023_J21.ab1: 33707-34044 , 027_C15.ab1: 33707-34044

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001229_030 0.0 - - PREDICTED: uncharacterized protein LOC104783713 [Camelina sativa]
2 Hb_003106_250 0.1498547843 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
3 Hb_009434_060 0.1636007643 - - T4.15 [Malus x robusta]
4 Hb_005542_010 0.1674907749 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
5 Hb_011472_050 0.1735893843 - - -
6 Hb_002110_110 0.1768676067 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
7 Hb_042463_060 0.1839585292 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000812_030 0.1877458626 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_010565_030 0.194459104 - - hypothetical protein VITISV_006810 [Vitis vinifera]
10 Hb_000032_020 0.195846325 - - Centromeric protein E, putative [Ricinus communis]
11 Hb_004976_080 0.1970698116 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
12 Hb_071130_020 0.1974233271 - - -
13 Hb_048476_070 0.1980431017 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001405_230 0.2009629844 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
15 Hb_001366_260 0.2032624941 - - T4.15 [Malus x robusta]
16 Hb_003786_010 0.2049481632 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
17 Hb_003683_200 0.2050030282 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
18 Hb_000120_870 0.2074732275 rubber biosynthesis Gene Name: CPT6 -
19 Hb_001514_150 0.2078630884 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
20 Hb_001856_110 0.2097903018 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]

Gene co-expression network

sample Hb_001229_030 Hb_001229_030 Hb_003106_250 Hb_003106_250 Hb_001229_030--Hb_003106_250 Hb_009434_060 Hb_009434_060 Hb_001229_030--Hb_009434_060 Hb_005542_010 Hb_005542_010 Hb_001229_030--Hb_005542_010 Hb_011472_050 Hb_011472_050 Hb_001229_030--Hb_011472_050 Hb_002110_110 Hb_002110_110 Hb_001229_030--Hb_002110_110 Hb_042463_060 Hb_042463_060 Hb_001229_030--Hb_042463_060 Hb_004884_210 Hb_004884_210 Hb_003106_250--Hb_004884_210 Hb_004976_080 Hb_004976_080 Hb_003106_250--Hb_004976_080 Hb_001405_230 Hb_001405_230 Hb_003106_250--Hb_001405_230 Hb_003106_250--Hb_011472_050 Hb_000072_240 Hb_000072_240 Hb_003106_250--Hb_000072_240 Hb_001366_260 Hb_001366_260 Hb_009434_060--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_009434_060--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_009434_060--Hb_007543_020 Hb_009434_060--Hb_011472_050 Hb_116784_020 Hb_116784_020 Hb_009434_060--Hb_116784_020 Hb_000173_110 Hb_000173_110 Hb_009434_060--Hb_000173_110 Hb_010565_030 Hb_010565_030 Hb_005542_010--Hb_010565_030 Hb_005542_010--Hb_011472_050 Hb_005542_010--Hb_002110_110 Hb_011609_210 Hb_011609_210 Hb_005542_010--Hb_011609_210 Hb_005542_010--Hb_000173_110 Hb_005542_010--Hb_009434_060 Hb_011472_050--Hb_010565_030 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_011472_050--Hb_001366_260 Hb_011472_050--Hb_000173_110 Hb_000032_020 Hb_000032_020 Hb_002110_110--Hb_000032_020 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_002110_110--Hb_001405_230 Hb_002110_110--Hb_010565_030 Hb_002110_110--Hb_011472_050 Hb_005155_010 Hb_005155_010 Hb_042463_060--Hb_005155_010 Hb_004505_030 Hb_004505_030 Hb_042463_060--Hb_004505_030 Hb_042463_060--Hb_002110_110 Hb_004605_020 Hb_004605_020 Hb_042463_060--Hb_004605_020 Hb_003517_090 Hb_003517_090 Hb_042463_060--Hb_003517_090 Hb_042463_060--Hb_000032_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0244653 0.293429 0.133357 0.0305363 0 0.0246043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0240006 0.0997395 0.40148

CAGE analysis