Hb_003106_250

Information

Type -
Description -
Location Contig3106: 168049-174558
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13520g
description POPTRDRAFT_564678; hypothetical protein
nr
ID XP_002311535.2
description hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
swissprot
ID Q9LQV2
description RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1
trembl
ID B9HJH5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13520g PE=4 SV=2
Gene Ontology
ID GO:0009058
description probable rna-dependent rna polymerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32910: 167311-167748
cDNA
(Sanger)
(ID:Location)		 018_M15r.ab1: 167125-168275 , 026_C15r.ab1: 167389-168069

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_250 0.0 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
2 Hb_004884_210 0.1108592831 - - PREDICTED: mitoferrin-like [Jatropha curcas]
3 Hb_001229_030 0.1498547843 - - PREDICTED: uncharacterized protein LOC104783713 [Camelina sativa]
4 Hb_004976_080 0.1585873131 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_001405_230 0.1634316322 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
6 Hb_011472_050 0.1660576573 - - -
7 Hb_000072_240 0.1675993807 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
8 Hb_002110_110 0.1690878168 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
9 Hb_010055_020 0.1751820055 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
10 Hb_005054_320 0.1775522174 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
11 Hb_000112_040 0.1805753148 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_000230_250 0.1808029449 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
13 Hb_000574_320 0.1834927591 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
14 Hb_001205_170 0.1841640833 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
15 Hb_000363_050 0.1864539273 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
16 Hb_004880_120 0.1876062241 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
17 Hb_172426_010 0.188704395 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
18 Hb_009434_060 0.1913106279 - - T4.15 [Malus x robusta]
19 Hb_000331_220 0.1914084102 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004007_210 0.1955487026 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003106_250 Hb_003106_250 Hb_004884_210 Hb_004884_210 Hb_003106_250--Hb_004884_210 Hb_001229_030 Hb_001229_030 Hb_003106_250--Hb_001229_030 Hb_004976_080 Hb_004976_080 Hb_003106_250--Hb_004976_080 Hb_001405_230 Hb_001405_230 Hb_003106_250--Hb_001405_230 Hb_011472_050 Hb_011472_050 Hb_003106_250--Hb_011472_050 Hb_000072_240 Hb_000072_240 Hb_003106_250--Hb_000072_240 Hb_034013_010 Hb_034013_010 Hb_004884_210--Hb_034013_010 Hb_010055_020 Hb_010055_020 Hb_004884_210--Hb_010055_020 Hb_172426_010 Hb_172426_010 Hb_004884_210--Hb_172426_010 Hb_001205_170 Hb_001205_170 Hb_004884_210--Hb_001205_170 Hb_000363_050 Hb_000363_050 Hb_004884_210--Hb_000363_050 Hb_009434_060 Hb_009434_060 Hb_001229_030--Hb_009434_060 Hb_005542_010 Hb_005542_010 Hb_001229_030--Hb_005542_010 Hb_001229_030--Hb_011472_050 Hb_002110_110 Hb_002110_110 Hb_001229_030--Hb_002110_110 Hb_042463_060 Hb_042463_060 Hb_001229_030--Hb_042463_060 Hb_019837_010 Hb_019837_010 Hb_004976_080--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_004976_080--Hb_000594_150 Hb_004976_080--Hb_000072_240 Hb_004907_070 Hb_004907_070 Hb_004976_080--Hb_004907_070 Hb_000035_060 Hb_000035_060 Hb_004976_080--Hb_000035_060 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020 Hb_001405_230--Hb_011472_050 Hb_001405_230--Hb_002110_110 Hb_001405_230--Hb_009434_060 Hb_001405_230--Hb_005542_010 Hb_001405_230--Hb_004976_080 Hb_000574_320 Hb_000574_320 Hb_001405_230--Hb_000574_320 Hb_010565_030 Hb_010565_030 Hb_011472_050--Hb_010565_030 Hb_011472_050--Hb_005542_010 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_000173_110 Hb_000173_110 Hb_011472_050--Hb_000173_110 Hb_011472_050--Hb_009434_060 Hb_000072_240--Hb_000594_150 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_010180_050 Hb_010180_050 Hb_000072_240--Hb_010180_050 Hb_003126_010 Hb_003126_010 Hb_000072_240--Hb_003126_010 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.520538 8.849 3.5351 0.845907 0.187671 0.221667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110272 0.0867708 0.220387 1.11441 10.75

CAGE analysis