Hb_003126_010

Information

Type -
Description -
Location Contig3126: 2805-4119
Sequence    

Annotation

kegg
ID mdm:103437410
description oligopeptide transporter 7-like
nr
ID XP_008374100.1
description PREDICTED: oligopeptide transporter 7-like isoform X1 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A078F0V6
description BnaC06g11350D protein OS=Brassica napus GN=BnaC06g11350D PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33079: 3459-15225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_010 0.0 - - PREDICTED: oligopeptide transporter 7-like isoform X1 [Malus domestica]
2 Hb_000072_240 0.1239620468 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
3 Hb_000049_290 0.1490425797 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
4 Hb_022487_010 0.154562597 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
5 Hb_000331_220 0.1588991493 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000363_050 0.1597142978 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
7 Hb_000594_150 0.1600458671 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
8 Hb_000808_260 0.1603071543 - - hypothetical protein RCOM_1434920 [Ricinus communis]
9 Hb_000780_160 0.1609139571 - - hypothetical protein RCOM_0483300 [Ricinus communis]
10 Hb_019863_050 0.1619078405 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
11 Hb_004976_080 0.1635289415 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
12 Hb_003517_090 0.1675183802 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
13 Hb_000574_340 0.1682898089 - - hypothetical protein RCOM_0901420 [Ricinus communis]
14 Hb_002999_140 0.1685889383 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_001836_010 0.1701924731 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
16 Hb_004994_200 0.1717281622 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
17 Hb_170401_010 0.1724675479 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_003643_080 0.173197159 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
19 Hb_001147_030 0.1737992219 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
20 Hb_002211_020 0.1739829552 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_003126_010 Hb_003126_010 Hb_000072_240 Hb_000072_240 Hb_003126_010--Hb_000072_240 Hb_000049_290 Hb_000049_290 Hb_003126_010--Hb_000049_290 Hb_022487_010 Hb_022487_010 Hb_003126_010--Hb_022487_010 Hb_000331_220 Hb_000331_220 Hb_003126_010--Hb_000331_220 Hb_000363_050 Hb_000363_050 Hb_003126_010--Hb_000363_050 Hb_000594_150 Hb_000594_150 Hb_003126_010--Hb_000594_150 Hb_000072_240--Hb_000594_150 Hb_004976_080 Hb_004976_080 Hb_000072_240--Hb_004976_080 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_010180_050 Hb_010180_050 Hb_000072_240--Hb_010180_050 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020 Hb_000049_290--Hb_022487_010 Hb_004324_220 Hb_004324_220 Hb_000049_290--Hb_004324_220 Hb_000049_290--Hb_000363_050 Hb_000140_220 Hb_000140_220 Hb_000049_290--Hb_000140_220 Hb_064293_010 Hb_064293_010 Hb_000049_290--Hb_064293_010 Hb_000049_290--Hb_000331_220 Hb_022487_010--Hb_004324_220 Hb_044624_010 Hb_044624_010 Hb_022487_010--Hb_044624_010 Hb_000427_040 Hb_000427_040 Hb_022487_010--Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_022487_010--Hb_032779_010 Hb_022487_010--Hb_000140_220 Hb_000112_040 Hb_000112_040 Hb_000331_220--Hb_000112_040 Hb_071130_020 Hb_071130_020 Hb_000331_220--Hb_071130_020 Hb_002818_070 Hb_002818_070 Hb_000331_220--Hb_002818_070 Hb_001836_010 Hb_001836_010 Hb_000331_220--Hb_001836_010 Hb_000331_220--Hb_064293_010 Hb_004994_200 Hb_004994_200 Hb_000331_220--Hb_004994_200 Hb_010055_020 Hb_010055_020 Hb_000363_050--Hb_010055_020 Hb_003517_090 Hb_003517_090 Hb_000363_050--Hb_003517_090 Hb_000363_050--Hb_022487_010 Hb_000363_050--Hb_004324_220 Hb_004143_140 Hb_004143_140 Hb_000363_050--Hb_004143_140 Hb_000594_150--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000594_150--Hb_019837_010 Hb_002999_130 Hb_002999_130 Hb_000594_150--Hb_002999_130 Hb_004907_070 Hb_004907_070 Hb_000594_150--Hb_004907_070 Hb_000594_150--Hb_010180_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141235 1.89629 1.1061 0.865167 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.128224 0 0.339197 3.04101

CAGE analysis