Hb_019863_050

Information

Type -
Description -
Location Contig19863: 105915-108559
Sequence    

Annotation

kegg
ID cam:101492951
description uncharacterized LOC101492951
nr
ID XP_008245303.1
description PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
swissprot
ID Q9LZX1
description Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1
trembl
ID B9T6F5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19926: 105862-106911 , PASA_asmbl_19928: 108046-108573
cDNA
(Sanger)
(ID:Location)		 015_M16.ab1: 105863-106318

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019863_050 0.0 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
2 Hb_011028_030 0.0906655069 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033363_030 0.1015930727 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
4 Hb_002211_020 0.1034753153 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
5 Hb_000072_240 0.1093780653 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
6 Hb_046739_010 0.1107089518 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
7 Hb_000031_320 0.1116464753 - - unnamed protein product [Vitis vinifera]
8 Hb_022693_080 0.1132195314 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
9 Hb_000167_100 0.1160863119 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_186844_010 0.1211395023 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_004979_080 0.123896784 - - kinase, putative [Ricinus communis]
12 Hb_000061_440 0.1240504429 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_000780_160 0.1241210211 - - hypothetical protein RCOM_0483300 [Ricinus communis]
14 Hb_006243_010 0.124630751 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
15 Hb_003643_080 0.1254137165 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
16 Hb_002155_020 0.1271910845 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
17 Hb_005337_140 0.1294445406 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
18 Hb_000373_010 0.1303618941 - - ATP binding protein, putative [Ricinus communis]
19 Hb_003970_010 0.1310963648 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
20 Hb_002407_090 0.1342958421 - - hypothetical protein JCGZ_00747 [Jatropha curcas]

Gene co-expression network

sample Hb_019863_050 Hb_019863_050 Hb_011028_030 Hb_011028_030 Hb_019863_050--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_019863_050--Hb_033363_030 Hb_002211_020 Hb_002211_020 Hb_019863_050--Hb_002211_020 Hb_000072_240 Hb_000072_240 Hb_019863_050--Hb_000072_240 Hb_046739_010 Hb_046739_010 Hb_019863_050--Hb_046739_010 Hb_000031_320 Hb_000031_320 Hb_019863_050--Hb_000031_320 Hb_002155_020 Hb_002155_020 Hb_011028_030--Hb_002155_020 Hb_011028_030--Hb_046739_010 Hb_000373_010 Hb_000373_010 Hb_011028_030--Hb_000373_010 Hb_002407_090 Hb_002407_090 Hb_011028_030--Hb_002407_090 Hb_011028_030--Hb_000031_320 Hb_000644_010 Hb_000644_010 Hb_011028_030--Hb_000644_010 Hb_096224_050 Hb_096224_050 Hb_033363_030--Hb_096224_050 Hb_004979_080 Hb_004979_080 Hb_033363_030--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_033363_030--Hb_000027_110 Hb_000668_180 Hb_000668_180 Hb_033363_030--Hb_000668_180 Hb_033363_030--Hb_046739_010 Hb_033363_030--Hb_011028_030 Hb_003970_010 Hb_003970_010 Hb_002211_020--Hb_003970_010 Hb_010904_010 Hb_010904_010 Hb_002211_020--Hb_010904_010 Hb_002211_020--Hb_011028_030 Hb_002211_020--Hb_000031_320 Hb_000110_040 Hb_000110_040 Hb_002211_020--Hb_000110_040 Hb_000594_150 Hb_000594_150 Hb_000072_240--Hb_000594_150 Hb_004976_080 Hb_004976_080 Hb_000072_240--Hb_004976_080 Hb_010180_050 Hb_010180_050 Hb_000072_240--Hb_010180_050 Hb_003126_010 Hb_003126_010 Hb_000072_240--Hb_003126_010 Hb_000072_240--Hb_002211_020 Hb_046739_010--Hb_000031_320 Hb_046739_010--Hb_002407_090 Hb_002010_030 Hb_002010_030 Hb_046739_010--Hb_002010_030 Hb_046739_010--Hb_096224_050 Hb_001677_170 Hb_001677_170 Hb_000031_320--Hb_001677_170 Hb_000031_320--Hb_002407_090 Hb_002818_160 Hb_002818_160 Hb_000031_320--Hb_002818_160 Hb_000031_320--Hb_003970_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.741037 41.686 44.7718 24.2989 0.815783 0.346909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0360423 0.0567068 0.211993 3.93442 86.2971

CAGE analysis