Hb_000031_320

Information

Type -
Description -
Location Contig31: 264226-276325
Sequence    

Annotation

kegg
ID rcu:RCOM_0919910
description glutamate receptor 2 plant, putative
nr
ID CBI23983.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID F6H9F0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0069g00330 PE=4 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_320 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_046739_010 0.0543125516 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
3 Hb_001677_170 0.0817714707 - - hypothetical protein M569_03661, partial [Genlisea aurea]
4 Hb_011028_030 0.0848776754 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002407_090 0.0851498495 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
6 Hb_002818_160 0.0858911291 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
7 Hb_003970_010 0.0865772866 - - PREDICTED: sigma factor binding protein 1, chloroplastic-like [Populus euphratica]
8 Hb_004017_030 0.0965656703 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
9 Hb_003654_020 0.0976447532 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_000186_180 0.0977074488 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
11 Hb_003767_060 0.0999967063 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
12 Hb_003209_150 0.10342587 - - CLE9, putative [Ricinus communis]
13 Hb_002211_020 0.1038394097 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
14 Hb_000167_100 0.1045671056 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002284_160 0.106574319 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
16 Hb_033363_030 0.1077518348 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
17 Hb_001777_030 0.1080143889 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
18 Hb_002010_030 0.1083016983 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
19 Hb_002307_120 0.111355493 - - scab resistance family protein [Populus trichocarpa]
20 Hb_019863_050 0.1116464753 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]

Gene co-expression network

sample Hb_000031_320 Hb_000031_320 Hb_046739_010 Hb_046739_010 Hb_000031_320--Hb_046739_010 Hb_001677_170 Hb_001677_170 Hb_000031_320--Hb_001677_170 Hb_011028_030 Hb_011028_030 Hb_000031_320--Hb_011028_030 Hb_002407_090 Hb_002407_090 Hb_000031_320--Hb_002407_090 Hb_002818_160 Hb_002818_160 Hb_000031_320--Hb_002818_160 Hb_003970_010 Hb_003970_010 Hb_000031_320--Hb_003970_010 Hb_046739_010--Hb_002407_090 Hb_046739_010--Hb_011028_030 Hb_033363_030 Hb_033363_030 Hb_046739_010--Hb_033363_030 Hb_002010_030 Hb_002010_030 Hb_046739_010--Hb_002010_030 Hb_096224_050 Hb_096224_050 Hb_046739_010--Hb_096224_050 Hb_001926_070 Hb_001926_070 Hb_001677_170--Hb_001926_070 Hb_111997_010 Hb_111997_010 Hb_001677_170--Hb_111997_010 Hb_000343_050 Hb_000343_050 Hb_001677_170--Hb_000343_050 Hb_006188_020 Hb_006188_020 Hb_001677_170--Hb_006188_020 Hb_001606_010 Hb_001606_010 Hb_001677_170--Hb_001606_010 Hb_002155_020 Hb_002155_020 Hb_011028_030--Hb_002155_020 Hb_000373_010 Hb_000373_010 Hb_011028_030--Hb_000373_010 Hb_011028_030--Hb_002407_090 Hb_000644_010 Hb_000644_010 Hb_011028_030--Hb_000644_010 Hb_000608_290 Hb_000608_290 Hb_002407_090--Hb_000608_290 Hb_011104_020 Hb_011104_020 Hb_002407_090--Hb_011104_020 Hb_000270_090 Hb_000270_090 Hb_002407_090--Hb_000270_090 Hb_002407_090--Hb_000373_010 Hb_002307_120 Hb_002307_120 Hb_002818_160--Hb_002307_120 Hb_003767_060 Hb_003767_060 Hb_002818_160--Hb_003767_060 Hb_000186_180 Hb_000186_180 Hb_002818_160--Hb_000186_180 Hb_003209_150 Hb_003209_150 Hb_002818_160--Hb_003209_150 Hb_003654_020 Hb_003654_020 Hb_002818_160--Hb_003654_020 Hb_002211_020 Hb_002211_020 Hb_003970_010--Hb_002211_020 Hb_010904_010 Hb_010904_010 Hb_003970_010--Hb_010904_010 Hb_008202_010 Hb_008202_010 Hb_003970_010--Hb_008202_010 Hb_000110_040 Hb_000110_040 Hb_003970_010--Hb_000110_040 Hb_003970_010--Hb_046739_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.14818 3.70213 1.58952 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0101193 0 0 0.176587 4.61167

CAGE analysis