Hb_000644_010

Information

Type -
Description -
Location Contig644: 35219-49661
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01300g
description POPTRDRAFT_569471; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_012086125.1
description PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
swissprot
ID Q1L8Y7
description Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1
trembl
ID A0A067K2K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21067 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52224: 50233-50552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000644_010 0.0 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
2 Hb_003643_080 0.0566551447 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
3 Hb_096224_050 0.0622977358 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
4 Hb_000373_010 0.0728979322 - - ATP binding protein, putative [Ricinus communis]
5 Hb_004979_080 0.0732765834 - - kinase, putative [Ricinus communis]
6 Hb_000027_110 0.0748396811 - - wall-associated kinase, putative [Ricinus communis]
7 Hb_002155_020 0.075337025 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
8 Hb_011028_030 0.0862794044 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004291_050 0.0940865455 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
10 Hb_004979_070 0.0976192301 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
11 Hb_007904_110 0.0978634705 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
12 Hb_033363_030 0.0989636947 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
13 Hb_000270_640 0.1013395464 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
14 Hb_002943_020 0.1061400047 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
15 Hb_027337_130 0.1082483883 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
16 Hb_002407_090 0.1088349341 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
17 Hb_186844_010 0.113584248 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000705_040 0.1142380437 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000680_130 0.1145787662 - - beta-galactosidase, putative [Ricinus communis]
20 Hb_046739_010 0.1163556161 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000644_010 Hb_000644_010 Hb_003643_080 Hb_003643_080 Hb_000644_010--Hb_003643_080 Hb_096224_050 Hb_096224_050 Hb_000644_010--Hb_096224_050 Hb_000373_010 Hb_000373_010 Hb_000644_010--Hb_000373_010 Hb_004979_080 Hb_004979_080 Hb_000644_010--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_000644_010--Hb_000027_110 Hb_002155_020 Hb_002155_020 Hb_000644_010--Hb_002155_020 Hb_003643_080--Hb_002155_020 Hb_011028_030 Hb_011028_030 Hb_003643_080--Hb_011028_030 Hb_000574_340 Hb_000574_340 Hb_003643_080--Hb_000574_340 Hb_003643_080--Hb_004979_080 Hb_003643_080--Hb_000373_010 Hb_007904_110 Hb_007904_110 Hb_096224_050--Hb_007904_110 Hb_004979_070 Hb_004979_070 Hb_096224_050--Hb_004979_070 Hb_096224_050--Hb_004979_080 Hb_096224_050--Hb_000027_110 Hb_033363_030 Hb_033363_030 Hb_096224_050--Hb_033363_030 Hb_000373_010--Hb_011028_030 Hb_000373_010--Hb_002155_020 Hb_000680_130 Hb_000680_130 Hb_000373_010--Hb_000680_130 Hb_002407_090 Hb_002407_090 Hb_000373_010--Hb_002407_090 Hb_000373_010--Hb_096224_050 Hb_004979_080--Hb_004979_070 Hb_004979_080--Hb_033363_030 Hb_004979_080--Hb_007904_110 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180 Hb_000027_110--Hb_033363_030 Hb_000027_110--Hb_000668_180 Hb_000116_090 Hb_000116_090 Hb_000027_110--Hb_000116_090 Hb_005305_070 Hb_005305_070 Hb_000027_110--Hb_005305_070 Hb_002155_020--Hb_011028_030 Hb_002155_020--Hb_000680_130 Hb_002155_020--Hb_002407_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.371265 0.583155 0.312972 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.134379 1.46517

CAGE analysis