Hb_007904_110

Information

Type -
Description -
Location Contig7904: 61109-61702
Sequence    

Annotation

kegg
ID vvi:100252545
description photosystem II core complex proteins psbY, chloroplastic
nr
ID XP_011042352.1
description PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
swissprot
ID P80470
description Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2
trembl
ID A9PJJ8
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0009523
description photosystem ii core complex proteins chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 023_P10.ab1: 61147-61777 , 026_N03.ab1: 61351-61810 , 050_L22.ab1: 61111-61810

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_110 0.0 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
2 Hb_004979_070 0.0303634974 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
3 Hb_096224_050 0.0588555516 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
4 Hb_005305_070 0.0726884215 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
5 Hb_119600_030 0.0742312896 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
6 Hb_025557_060 0.076365652 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
7 Hb_004979_080 0.0769514918 - - kinase, putative [Ricinus communis]
8 Hb_002701_250 0.079284263 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
9 Hb_000482_180 0.0811709355 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
10 Hb_020367_040 0.0840965581 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
11 Hb_004291_050 0.0894038343 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
12 Hb_002226_090 0.0902077078 - - Stachyose synthase precursor, putative [Ricinus communis]
13 Hb_000027_110 0.0927098866 - - wall-associated kinase, putative [Ricinus communis]
14 Hb_000373_160 0.0935951835 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
15 Hb_001699_140 0.097288463 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
16 Hb_000644_010 0.0978634705 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
17 Hb_033363_030 0.0983144469 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
18 Hb_005111_040 0.0984025344 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_000270_640 0.1021971522 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
20 Hb_005054_120 0.1040424496 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007904_110 Hb_007904_110 Hb_004979_070 Hb_004979_070 Hb_007904_110--Hb_004979_070 Hb_096224_050 Hb_096224_050 Hb_007904_110--Hb_096224_050 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_119600_030 Hb_119600_030 Hb_007904_110--Hb_119600_030 Hb_025557_060 Hb_025557_060 Hb_007904_110--Hb_025557_060 Hb_004979_080 Hb_004979_080 Hb_007904_110--Hb_004979_080 Hb_004979_070--Hb_096224_050 Hb_004979_070--Hb_004979_080 Hb_004979_070--Hb_025557_060 Hb_004979_070--Hb_119600_030 Hb_004291_050 Hb_004291_050 Hb_004979_070--Hb_004291_050 Hb_000644_010 Hb_000644_010 Hb_096224_050--Hb_000644_010 Hb_096224_050--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_096224_050--Hb_000027_110 Hb_033363_030 Hb_033363_030 Hb_096224_050--Hb_033363_030 Hb_001699_140 Hb_001699_140 Hb_005305_070--Hb_001699_140 Hb_000017_210 Hb_000017_210 Hb_005305_070--Hb_000017_210 Hb_000906_080 Hb_000906_080 Hb_005305_070--Hb_000906_080 Hb_000483_440 Hb_000483_440 Hb_005305_070--Hb_000483_440 Hb_000482_180 Hb_000482_180 Hb_005305_070--Hb_000482_180 Hb_119600_030--Hb_025557_060 Hb_000373_160 Hb_000373_160 Hb_119600_030--Hb_000373_160 Hb_002852_010 Hb_002852_010 Hb_119600_030--Hb_002852_010 Hb_002701_250 Hb_002701_250 Hb_119600_030--Hb_002701_250 Hb_018591_020 Hb_018591_020 Hb_025557_060--Hb_018591_020 Hb_025557_060--Hb_096224_050 Hb_025557_060--Hb_001699_140 Hb_004979_080--Hb_000644_010 Hb_004979_080--Hb_033363_030 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112023 124.85 277.53 211.213 0.0888299 0.302294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.410002 0.483329 0 31.5347 795.628

CAGE analysis