Hb_004324_220

Information

Type transcription factor
Description TF Family: WRKY
Location Contig4324: 135868-137689
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01380g
description POPTRDRAFT_772348; hypothetical protein
nr
ID XP_012090116.1
description PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
swissprot
ID Q9SUP6
description Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1
trembl
ID S5CS92
description Uncharacterized protein OS=Jatropha curcas GN=WRKY53 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42321: 135587-135728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_220 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
2 Hb_044624_010 0.0470377055 - - -
3 Hb_022487_010 0.0537449597 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
4 Hb_175670_010 0.0839886147 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_001046_040 0.0908165748 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000049_290 0.0913479737 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
7 Hb_000313_100 0.0970957852 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
8 Hb_115114_010 0.1057347926 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005074_010 0.109087781 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
10 Hb_000140_220 0.1091224566 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
11 Hb_003562_040 0.1106820523 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
12 Hb_000427_040 0.114178661 - - Gibberellin receptor GID1, putative [Ricinus communis]
13 Hb_004143_140 0.1212782203 - - glycosyltransferase, partial [Arabidopsis thaliana]
14 Hb_000260_480 0.1213948765 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
15 Hb_000363_050 0.1241190047 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
16 Hb_064293_010 0.1260585 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
17 Hb_005271_180 0.1264453459 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
18 Hb_000813_090 0.1286415825 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
19 Hb_001821_050 0.1325601165 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
20 Hb_032779_010 0.1341162422 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_004324_220 Hb_004324_220 Hb_044624_010 Hb_044624_010 Hb_004324_220--Hb_044624_010 Hb_022487_010 Hb_022487_010 Hb_004324_220--Hb_022487_010 Hb_175670_010 Hb_175670_010 Hb_004324_220--Hb_175670_010 Hb_001046_040 Hb_001046_040 Hb_004324_220--Hb_001046_040 Hb_000049_290 Hb_000049_290 Hb_004324_220--Hb_000049_290 Hb_000313_100 Hb_000313_100 Hb_004324_220--Hb_000313_100 Hb_044624_010--Hb_001046_040 Hb_044624_010--Hb_022487_010 Hb_044624_010--Hb_175670_010 Hb_115114_010 Hb_115114_010 Hb_044624_010--Hb_115114_010 Hb_000813_090 Hb_000813_090 Hb_044624_010--Hb_000813_090 Hb_022487_010--Hb_000049_290 Hb_000427_040 Hb_000427_040 Hb_022487_010--Hb_000427_040 Hb_032779_010 Hb_032779_010 Hb_022487_010--Hb_032779_010 Hb_000140_220 Hb_000140_220 Hb_022487_010--Hb_000140_220 Hb_175670_010--Hb_000313_100 Hb_005569_030 Hb_005569_030 Hb_175670_010--Hb_005569_030 Hb_003562_040 Hb_003562_040 Hb_175670_010--Hb_003562_040 Hb_175670_010--Hb_001046_040 Hb_001046_040--Hb_000813_090 Hb_001046_040--Hb_115114_010 Hb_004143_140 Hb_004143_140 Hb_001046_040--Hb_004143_140 Hb_000363_050 Hb_000363_050 Hb_000049_290--Hb_000363_050 Hb_000049_290--Hb_000140_220 Hb_064293_010 Hb_064293_010 Hb_000049_290--Hb_064293_010 Hb_000331_220 Hb_000331_220 Hb_000049_290--Hb_000331_220 Hb_000313_100--Hb_005569_030 Hb_033153_040 Hb_033153_040 Hb_000313_100--Hb_033153_040 Hb_002890_320 Hb_002890_320 Hb_000313_100--Hb_002890_320 Hb_001821_050 Hb_001821_050 Hb_000313_100--Hb_001821_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.59183 0.664353 0.84038 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.263744 1.4255

CAGE analysis