Hb_001366_260

Information

Type -
Description -
Location Contig1366: 223508-234906
Sequence    

Annotation

kegg
ID mdm:103417687
description uncharacterized LOC103417687
nr
ID CCH50976.1
description T4.15 [Malus x robusta]
swissprot
ID P14381
description Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1
trembl
ID I1IFX6
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI3G61082 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_260 0.0 - - T4.15 [Malus x robusta]
2 Hb_000820_100 0.0523478206 - - RNA-directed DNA polymerase [Arachis hypogaea]
3 Hb_116784_020 0.0865719615 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_067472_010 0.0879724873 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
5 Hb_007543_020 0.0879831416 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
6 Hb_000173_110 0.0983446924 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
7 Hb_005092_090 0.1053640184 - - cold regulated protein [Manihot esculenta]
8 Hb_011472_050 0.1101035963 - - -
9 Hb_009434_060 0.1103628984 - - T4.15 [Malus x robusta]
10 Hb_001468_040 0.1132673615 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
11 Hb_001514_150 0.116798121 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
12 Hb_004312_020 0.1173525016 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002013_030 0.1227349182 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
14 Hb_142522_040 0.1243061163 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_003913_040 0.1274662632 - - ferric reductase oxidase [Manihot esculenta]
16 Hb_000123_340 0.1299816221 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
17 Hb_000352_060 0.1301424945 - - RNA-directed DNA polymerase [Arachis hypogaea]
18 Hb_010565_030 0.1313355073 - - hypothetical protein VITISV_006810 [Vitis vinifera]
19 Hb_001345_040 0.1314472369 - - hypothetical protein VITISV_015004 [Vitis vinifera]
20 Hb_000732_180 0.1327201772 - - Uncharacterized protein TCM_030007 [Theobroma cacao]

Gene co-expression network

sample Hb_001366_260 Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_001366_260--Hb_000820_100 Hb_116784_020 Hb_116784_020 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_007543_020 Hb_007543_020 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_000173_110 Hb_000820_100--Hb_116784_020 Hb_000123_340 Hb_000123_340 Hb_000820_100--Hb_000123_340 Hb_116784_020--Hb_067472_010 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_067472_010--Hb_001468_040 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_007543_020--Hb_000123_340 Hb_000173_110--Hb_000123_340 Hb_010565_030 Hb_010565_030 Hb_000173_110--Hb_010565_030 Hb_000173_110--Hb_116784_020 Hb_000173_110--Hb_011472_050 Hb_006588_020 Hb_006588_020 Hb_005092_090--Hb_006588_020 Hb_000574_340 Hb_000574_340 Hb_005092_090--Hb_000574_340 Hb_001345_040 Hb_001345_040 Hb_005092_090--Hb_001345_040 Hb_005092_090--Hb_116784_020 Hb_012796_030 Hb_012796_030 Hb_005092_090--Hb_012796_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0398392 2.9227 1.59582 0.834515 0.0834575 0.293865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0213487 0.0167981 0.0318964 2.15093 8.81677

CAGE analysis