Hb_000035_060

Information

Type -
Description -
Location Contig35: 78621-86951
Sequence    

Annotation

kegg
ID rcu:RCOM_0921740
description chaperone clpb, putative
nr
ID XP_012076448.1
description PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
swissprot
ID Q8VYJ7
description Chaperone protein ClpB4, mitochondrial OS=Arabidopsis thaliana GN=CLPB4 PE=2 SV=1
trembl
ID A0A067KNZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07100 PE=3 SV=1
Gene Ontology
ID GO:0009570
description chaperone protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36394: 78733-86974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_060 0.0 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
2 Hb_000556_070 0.1061174065 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
3 Hb_001141_060 0.1260222159 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
4 Hb_001499_070 0.1279235716 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
5 Hb_187005_010 0.1310127792 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
6 Hb_004976_080 0.131456229 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
7 Hb_001386_020 0.1330492651 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004907_070 0.1340883066 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
9 Hb_003106_240 0.1348695535 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
10 Hb_000103_410 0.1350823134 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
11 Hb_019837_010 0.1380955205 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029584_160 0.1390335064 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
13 Hb_000165_100 0.1428945409 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
14 Hb_001514_240 0.1435716008 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
15 Hb_025045_010 0.1446341682 - - catalytic, putative [Ricinus communis]
16 Hb_026698_020 0.1449845776 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_001369_020 0.1450168175 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
18 Hb_000753_140 0.1462643427 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
19 Hb_007193_030 0.148415067 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
20 Hb_004346_040 0.1504786275 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]

Gene co-expression network

sample Hb_000035_060 Hb_000035_060 Hb_000556_070 Hb_000556_070 Hb_000035_060--Hb_000556_070 Hb_001141_060 Hb_001141_060 Hb_000035_060--Hb_001141_060 Hb_001499_070 Hb_001499_070 Hb_000035_060--Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_000035_060--Hb_187005_010 Hb_004976_080 Hb_004976_080 Hb_000035_060--Hb_004976_080 Hb_001386_020 Hb_001386_020 Hb_000035_060--Hb_001386_020 Hb_000589_420 Hb_000589_420 Hb_000556_070--Hb_000589_420 Hb_004678_010 Hb_004678_010 Hb_000556_070--Hb_004678_010 Hb_000574_320 Hb_000574_320 Hb_000556_070--Hb_000574_320 Hb_000069_500 Hb_000069_500 Hb_000556_070--Hb_000069_500 Hb_000556_070--Hb_001141_060 Hb_001948_090 Hb_001948_090 Hb_001141_060--Hb_001948_090 Hb_003912_080 Hb_003912_080 Hb_001141_060--Hb_003912_080 Hb_001141_060--Hb_004678_010 Hb_172676_010 Hb_172676_010 Hb_001141_060--Hb_172676_010 Hb_000320_270 Hb_000320_270 Hb_001141_060--Hb_000320_270 Hb_001499_070--Hb_187005_010 Hb_000175_270 Hb_000175_270 Hb_001499_070--Hb_000175_270 Hb_007290_070 Hb_007290_070 Hb_001499_070--Hb_007290_070 Hb_001514_240 Hb_001514_240 Hb_001499_070--Hb_001514_240 Hb_013968_010 Hb_013968_010 Hb_001499_070--Hb_013968_010 Hb_001408_020 Hb_001408_020 Hb_001499_070--Hb_001408_020 Hb_187005_010--Hb_000175_270 Hb_187005_010--Hb_001514_240 Hb_187005_010--Hb_007290_070 Hb_187005_010--Hb_001408_020 Hb_002804_010 Hb_002804_010 Hb_187005_010--Hb_002804_010 Hb_019837_010 Hb_019837_010 Hb_004976_080--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_004976_080--Hb_000594_150 Hb_000072_240 Hb_000072_240 Hb_004976_080--Hb_000072_240 Hb_004907_070 Hb_004907_070 Hb_004976_080--Hb_004907_070 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020 Hb_000086_640 Hb_000086_640 Hb_001386_020--Hb_000086_640 Hb_000753_140 Hb_000753_140 Hb_001386_020--Hb_000753_140 Hb_132840_020 Hb_132840_020 Hb_001386_020--Hb_132840_020 Hb_000035_490 Hb_000035_490 Hb_001386_020--Hb_000035_490 Hb_002383_050 Hb_002383_050 Hb_001386_020--Hb_002383_050 Hb_011381_070 Hb_011381_070 Hb_001386_020--Hb_011381_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12222 47.4281 38.8227 19.2042 2.42068 3.59751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3104 1.21193 3.62377 11.4477 47.0079

CAGE analysis