Hb_000556_070

Information

Type -
Description -
Location Contig556: 46442-48460
Sequence    

Annotation

kegg
ID rcu:RCOM_1612610
description ATP binding protein, putative
nr
ID XP_012083532.1
description PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
swissprot
ID O64639
description Receptor-like serine/threonine-protein kinase At2g45590 OS=Arabidopsis thaliana GN=At2g45590 PE=2 SV=1
trembl
ID A0A067K137
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14494 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like serine threonine-protein kinase at2g45590

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48501: 45943-48430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000556_070 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
2 Hb_000035_060 0.1061174065 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
3 Hb_000589_420 0.1217416807 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
4 Hb_004678_010 0.1329665686 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
5 Hb_000574_320 0.1398409783 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
6 Hb_000069_500 0.1436781796 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
7 Hb_001141_060 0.1444082162 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
8 Hb_004346_040 0.1459182771 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
9 Hb_003912_080 0.1468927386 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
10 Hb_005015_020 0.1471388874 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
11 Hb_000107_090 0.1486399744 - - PREDICTED: kinesin KP1 [Jatropha curcas]
12 Hb_002026_030 0.1512090686 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
13 Hb_001948_090 0.1526584898 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
14 Hb_029584_160 0.1533355845 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
15 Hb_000103_410 0.1545229656 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
16 Hb_000665_200 0.1553812898 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_002188_030 0.1568926328 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001863_340 0.1574829019 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
19 Hb_000446_040 0.1592749542 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
20 Hb_005288_180 0.1596665445 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000556_070 Hb_000556_070 Hb_000035_060 Hb_000035_060 Hb_000556_070--Hb_000035_060 Hb_000589_420 Hb_000589_420 Hb_000556_070--Hb_000589_420 Hb_004678_010 Hb_004678_010 Hb_000556_070--Hb_004678_010 Hb_000574_320 Hb_000574_320 Hb_000556_070--Hb_000574_320 Hb_000069_500 Hb_000069_500 Hb_000556_070--Hb_000069_500 Hb_001141_060 Hb_001141_060 Hb_000556_070--Hb_001141_060 Hb_000035_060--Hb_001141_060 Hb_001499_070 Hb_001499_070 Hb_000035_060--Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_000035_060--Hb_187005_010 Hb_004976_080 Hb_004976_080 Hb_000035_060--Hb_004976_080 Hb_001386_020 Hb_001386_020 Hb_000035_060--Hb_001386_020 Hb_167775_010 Hb_167775_010 Hb_000589_420--Hb_167775_010 Hb_000567_240 Hb_000567_240 Hb_000589_420--Hb_000567_240 Hb_006717_010 Hb_006717_010 Hb_000589_420--Hb_006717_010 Hb_000321_120 Hb_000321_120 Hb_000589_420--Hb_000321_120 Hb_003912_080 Hb_003912_080 Hb_000589_420--Hb_003912_080 Hb_017098_040 Hb_017098_040 Hb_004678_010--Hb_017098_040 Hb_004678_010--Hb_003912_080 Hb_002026_030 Hb_002026_030 Hb_004678_010--Hb_002026_030 Hb_000635_050 Hb_000635_050 Hb_004678_010--Hb_000635_050 Hb_004678_010--Hb_001141_060 Hb_002675_080 Hb_002675_080 Hb_004678_010--Hb_002675_080 Hb_140389_010 Hb_140389_010 Hb_000574_320--Hb_140389_010 Hb_000574_320--Hb_000069_500 Hb_011472_050 Hb_011472_050 Hb_000574_320--Hb_011472_050 Hb_006277_080 Hb_006277_080 Hb_000574_320--Hb_006277_080 Hb_002030_050 Hb_002030_050 Hb_000574_320--Hb_002030_050 Hb_001213_040 Hb_001213_040 Hb_000069_500--Hb_001213_040 Hb_005015_020 Hb_005015_020 Hb_000069_500--Hb_005015_020 Hb_024066_040 Hb_024066_040 Hb_000069_500--Hb_024066_040 Hb_005288_180 Hb_005288_180 Hb_000069_500--Hb_005288_180 Hb_000069_500--Hb_140389_010 Hb_001948_090 Hb_001948_090 Hb_001141_060--Hb_001948_090 Hb_001141_060--Hb_003912_080 Hb_172676_010 Hb_172676_010 Hb_001141_060--Hb_172676_010 Hb_000320_270 Hb_000320_270 Hb_001141_060--Hb_000320_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.828262 11.294 11.3372 7.42738 1.62024 1.49845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200997 0.246012 1.4999 1.83149 15.2674

CAGE analysis