Hb_024066_040

Information

Type -
Description -
Location Contig24066: 47640-52247
Sequence    

Annotation

kegg
ID rcu:RCOM_0828260
description hypothetical protein
nr
ID XP_012065505.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9S3S0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0828260 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25217: 47654-52238 , PASA_asmbl_25218: 51154-51543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024066_040 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_034507_050 0.1200066166 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
3 Hb_000069_500 0.1362814472 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
4 Hb_000107_090 0.1391839799 - - PREDICTED: kinesin KP1 [Jatropha curcas]
5 Hb_002811_050 0.1393592208 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
6 Hb_000787_210 0.1397194809 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004117_370 0.1408974478 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
8 Hb_000215_230 0.141401893 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
9 Hb_110252_010 0.142916002 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
10 Hb_173660_010 0.149868291 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Malus domestica]
11 Hb_137600_010 0.151039855 - - 50S ribosomal protein L1p, putative [Ricinus communis]
12 Hb_000056_110 0.1550701773 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
13 Hb_000574_320 0.156509894 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
14 Hb_007982_040 0.1589412221 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_000099_170 0.1596845025 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
16 Hb_000556_070 0.1614681928 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
17 Hb_005288_180 0.1618814302 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000127_100 0.1639495516 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
19 Hb_011649_010 0.1659028775 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
20 Hb_001213_040 0.1665315316 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_024066_040 Hb_024066_040 Hb_034507_050 Hb_034507_050 Hb_024066_040--Hb_034507_050 Hb_000069_500 Hb_000069_500 Hb_024066_040--Hb_000069_500 Hb_000107_090 Hb_000107_090 Hb_024066_040--Hb_000107_090 Hb_002811_050 Hb_002811_050 Hb_024066_040--Hb_002811_050 Hb_000787_210 Hb_000787_210 Hb_024066_040--Hb_000787_210 Hb_004117_370 Hb_004117_370 Hb_024066_040--Hb_004117_370 Hb_000056_110 Hb_000056_110 Hb_034507_050--Hb_000056_110 Hb_010174_100 Hb_010174_100 Hb_034507_050--Hb_010174_100 Hb_034507_050--Hb_000787_210 Hb_001252_030 Hb_001252_030 Hb_034507_050--Hb_001252_030 Hb_000103_230 Hb_000103_230 Hb_034507_050--Hb_000103_230 Hb_000574_320 Hb_000574_320 Hb_000069_500--Hb_000574_320 Hb_001213_040 Hb_001213_040 Hb_000069_500--Hb_001213_040 Hb_005015_020 Hb_005015_020 Hb_000069_500--Hb_005015_020 Hb_005288_180 Hb_005288_180 Hb_000069_500--Hb_005288_180 Hb_140389_010 Hb_140389_010 Hb_000069_500--Hb_140389_010 Hb_008165_050 Hb_008165_050 Hb_000107_090--Hb_008165_050 Hb_000272_030 Hb_000272_030 Hb_000107_090--Hb_000272_030 Hb_000107_090--Hb_004117_370 Hb_000260_410 Hb_000260_410 Hb_000107_090--Hb_000260_410 Hb_000107_090--Hb_000787_210 Hb_007982_040 Hb_007982_040 Hb_002811_050--Hb_007982_040 Hb_000099_170 Hb_000099_170 Hb_002811_050--Hb_000099_170 Hb_000264_280 Hb_000264_280 Hb_002811_050--Hb_000264_280 Hb_071079_020 Hb_071079_020 Hb_002811_050--Hb_071079_020 Hb_000208_270 Hb_000208_270 Hb_002811_050--Hb_000208_270 Hb_005181_120 Hb_005181_120 Hb_002811_050--Hb_005181_120 Hb_000787_210--Hb_000103_230 Hb_020141_030 Hb_020141_030 Hb_000787_210--Hb_020141_030 Hb_000787_210--Hb_000056_110 Hb_000787_210--Hb_000208_270 Hb_000787_210--Hb_001252_030 Hb_012833_010 Hb_012833_010 Hb_004117_370--Hb_012833_010 Hb_004531_170 Hb_004531_170 Hb_004117_370--Hb_004531_170 Hb_000982_100 Hb_000982_100 Hb_004117_370--Hb_000982_100 Hb_000127_100 Hb_000127_100 Hb_004117_370--Hb_000127_100 Hb_000167_100 Hb_000167_100 Hb_004117_370--Hb_000167_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8877 37.9823 60.3404 44.9515 6.98479 5.33313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57714 0.910094 2.99725 2.3216 109.172

CAGE analysis