Hb_034507_050

Information

Type -
Description -
Location Contig34507: 94733-95895
Sequence    

Annotation

kegg
ID rcu:RCOM_0098840
description hypothetical protein
nr
ID XP_012087909.1
description PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25051 PE=4 SV=1
Gene Ontology
ID GO:0009535
description 8-amino-7-oxononanoate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36055: 92649-93761 , PASA_asmbl_36056: 93796-94287 , PASA_asmbl_36057: 94768-95378 , PASA_asmbl_36058: 95399-95864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034507_050 0.0 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
2 Hb_000056_110 0.0940616731 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
3 Hb_010174_100 0.0980902281 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
4 Hb_000787_210 0.1082069817 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024066_040 0.1200066166 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
6 Hb_001252_030 0.1319379193 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
7 Hb_000103_230 0.1368301379 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
8 Hb_000392_210 0.1410819642 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
9 Hb_020141_030 0.150947205 - - solanesyl diphosphate synthase, putative [Ricinus communis]
10 Hb_000007_030 0.1553125656 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000208_270 0.156888466 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
12 Hb_001213_040 0.1568897763 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
13 Hb_000215_230 0.1589233369 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
14 Hb_002811_050 0.1609956257 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
15 Hb_000130_140 0.1661148542 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639203 isoform X1 [Jatropha curcas]
16 Hb_001053_020 0.1678248736 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
17 Hb_022693_080 0.1682117837 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
18 Hb_000237_170 0.1692394738 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
19 Hb_032631_020 0.1701441809 - - glycine-rich family protein [Populus trichocarpa]
20 Hb_003849_050 0.1710211076 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_034507_050 Hb_034507_050 Hb_000056_110 Hb_000056_110 Hb_034507_050--Hb_000056_110 Hb_010174_100 Hb_010174_100 Hb_034507_050--Hb_010174_100 Hb_000787_210 Hb_000787_210 Hb_034507_050--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_034507_050--Hb_024066_040 Hb_001252_030 Hb_001252_030 Hb_034507_050--Hb_001252_030 Hb_000103_230 Hb_000103_230 Hb_034507_050--Hb_000103_230 Hb_000056_110--Hb_000787_210 Hb_000056_110--Hb_010174_100 Hb_000056_110--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000056_110--Hb_020141_030 Hb_001677_040 Hb_001677_040 Hb_000056_110--Hb_001677_040 Hb_010174_100--Hb_000787_210 Hb_000208_270 Hb_000208_270 Hb_010174_100--Hb_000208_270 Hb_002814_010 Hb_002814_010 Hb_010174_100--Hb_002814_010 Hb_010174_100--Hb_001252_030 Hb_000787_210--Hb_000103_230 Hb_000787_210--Hb_020141_030 Hb_000787_210--Hb_000208_270 Hb_000787_210--Hb_001252_030 Hb_000069_500 Hb_000069_500 Hb_024066_040--Hb_000069_500 Hb_000107_090 Hb_000107_090 Hb_024066_040--Hb_000107_090 Hb_002811_050 Hb_002811_050 Hb_024066_040--Hb_002811_050 Hb_024066_040--Hb_000787_210 Hb_004117_370 Hb_004117_370 Hb_024066_040--Hb_004117_370 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_001252_030--Hb_000103_230 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_001252_030--Hb_020141_030 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060 Hb_000103_230--Hb_020141_030 Hb_000130_140 Hb_000130_140 Hb_000103_230--Hb_000130_140 Hb_000237_170 Hb_000237_170 Hb_000103_230--Hb_000237_170 Hb_000103_230--Hb_000208_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.913189 4.92603 6.30469 8.64091 1.40852 1.16534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139358 0.0365373 0.0675497 0.733474 17.4249

CAGE analysis