Hb_000056_110

Information

Type -
Description -
Location Contig56: 179267-179869
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10330g
description POPTRDRAFT_726649; hypothetical protein
nr
ID XP_012067597.1
description PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15572 PE=4 SV=1
Gene Ontology
ID GO:0009535
description nad -linked oxidoreductase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48690: 179044-179912
cDNA
(Sanger)
(ID:Location)		 045_J09.ab1: 179136-179842 , 052_J24.ab1: 179178-179912

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_110 0.0 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
2 Hb_034507_050 0.0940616731 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
3 Hb_000787_210 0.100778719 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010174_100 0.1183300629 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
5 Hb_001252_030 0.1202396053 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
6 Hb_020141_030 0.1208178072 - - solanesyl diphosphate synthase, putative [Ricinus communis]
7 Hb_001677_040 0.124000166 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
8 Hb_032631_020 0.1260543146 - - glycine-rich family protein [Populus trichocarpa]
9 Hb_003006_090 0.1264619685 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
10 Hb_000208_270 0.1269159978 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
11 Hb_001053_020 0.1342392796 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
12 Hb_000347_190 0.1355877176 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
13 Hb_003929_240 0.1356553179 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
14 Hb_020400_020 0.1367401056 - - starch synthase isoform II [Manihot esculenta]
15 Hb_000392_210 0.1376102158 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
16 Hb_000350_030 0.1376840986 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
17 Hb_002811_050 0.1394475782 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
18 Hb_001221_400 0.1419155966 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
19 Hb_002542_060 0.1438873 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
20 Hb_000103_230 0.1439373427 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000056_110 Hb_000056_110 Hb_034507_050 Hb_034507_050 Hb_000056_110--Hb_034507_050 Hb_000787_210 Hb_000787_210 Hb_000056_110--Hb_000787_210 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_001252_030 Hb_001252_030 Hb_000056_110--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000056_110--Hb_020141_030 Hb_001677_040 Hb_001677_040 Hb_000056_110--Hb_001677_040 Hb_034507_050--Hb_010174_100 Hb_034507_050--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_034507_050--Hb_024066_040 Hb_034507_050--Hb_001252_030 Hb_000103_230 Hb_000103_230 Hb_034507_050--Hb_000103_230 Hb_000787_210--Hb_000103_230 Hb_000787_210--Hb_020141_030 Hb_000208_270 Hb_000208_270 Hb_000787_210--Hb_000208_270 Hb_000787_210--Hb_001252_030 Hb_010174_100--Hb_000787_210 Hb_010174_100--Hb_000208_270 Hb_002814_010 Hb_002814_010 Hb_010174_100--Hb_002814_010 Hb_010174_100--Hb_001252_030 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_001252_030--Hb_000103_230 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_001252_030--Hb_020141_030 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060 Hb_020141_030--Hb_000208_270 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_003018_150 Hb_003018_150 Hb_020141_030--Hb_003018_150 Hb_020141_030--Hb_002814_010 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_001195_660 Hb_001195_660 Hb_001677_040--Hb_001195_660 Hb_000417_050 Hb_000417_050 Hb_001677_040--Hb_000417_050 Hb_000333_030 Hb_000333_030 Hb_001677_040--Hb_000333_030 Hb_002662_110 Hb_002662_110 Hb_001677_040--Hb_002662_110 Hb_002675_080 Hb_002675_080 Hb_001677_040--Hb_002675_080 Hb_001677_040--Hb_001053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.62454 11.8706 16.8991 30.9668 2.55798 3.53124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10253 0.787728 0.827237 3.61702 48.821

CAGE analysis