Hb_010174_100

Information

Type -
Description -
Location Contig10174: 95915-96493
Sequence    

Annotation

kegg
ID vvi:100252545
description photosystem II core complex proteins psbY, chloroplastic
nr
ID XP_011042352.1
description PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
swissprot
ID P80470
description Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2
trembl
ID A9PJJ8
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0009523
description photosystem ii core complex proteins chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00844: 95828-96698
cDNA
(Sanger)
(ID:Location)		 011_C12.ab1: 95886-96602 , 014_L03.ab1: 95843-96597 , 025_M17.ab1: 95886-96602 , 028_J16.ab1: 95865-96588 , 034_C20.ab1: 95843-96628 , 037_M17.ab1: 95865-96603 , 042_G10.ab1: 95859-96573

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_100 0.0 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
2 Hb_034507_050 0.0980902281 - - PREDICTED: uncharacterized protein LOC105646633 isoform X2 [Jatropha curcas]
3 Hb_000056_110 0.1183300629 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
4 Hb_000787_210 0.1428515729 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000208_270 0.1529200654 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
6 Hb_002814_010 0.1584195279 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
7 Hb_001252_030 0.1594927856 - - Serine/threonine-protein kinase Nek8, putative [Ricinus communis]
8 Hb_000103_230 0.165497778 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
9 Hb_000237_170 0.1659986787 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
10 Hb_000007_030 0.1672681415 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_020141_030 0.1672891829 - - solanesyl diphosphate synthase, putative [Ricinus communis]
12 Hb_020400_020 0.1683890464 - - starch synthase isoform II [Manihot esculenta]
13 Hb_032631_020 0.1720725277 - - glycine-rich family protein [Populus trichocarpa]
14 Hb_000084_140 0.1723601751 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
15 Hb_002030_050 0.1749106902 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
16 Hb_001213_040 0.17673004 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
17 Hb_001377_060 0.1770466057 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
18 Hb_000439_020 0.177447383 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
19 Hb_010620_030 0.1781121281 - - beta-amyrin synthase [Euphorbia tirucalli]
20 Hb_000392_210 0.1793431873 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]

Gene co-expression network

sample Hb_010174_100 Hb_010174_100 Hb_034507_050 Hb_034507_050 Hb_010174_100--Hb_034507_050 Hb_000056_110 Hb_000056_110 Hb_010174_100--Hb_000056_110 Hb_000787_210 Hb_000787_210 Hb_010174_100--Hb_000787_210 Hb_000208_270 Hb_000208_270 Hb_010174_100--Hb_000208_270 Hb_002814_010 Hb_002814_010 Hb_010174_100--Hb_002814_010 Hb_001252_030 Hb_001252_030 Hb_010174_100--Hb_001252_030 Hb_034507_050--Hb_000056_110 Hb_034507_050--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_034507_050--Hb_024066_040 Hb_034507_050--Hb_001252_030 Hb_000103_230 Hb_000103_230 Hb_034507_050--Hb_000103_230 Hb_000056_110--Hb_000787_210 Hb_000056_110--Hb_001252_030 Hb_020141_030 Hb_020141_030 Hb_000056_110--Hb_020141_030 Hb_001677_040 Hb_001677_040 Hb_000056_110--Hb_001677_040 Hb_000787_210--Hb_000103_230 Hb_000787_210--Hb_020141_030 Hb_000787_210--Hb_000208_270 Hb_000787_210--Hb_001252_030 Hb_000208_270--Hb_020141_030 Hb_010098_040 Hb_010098_040 Hb_000208_270--Hb_010098_040 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_000966_040 Hb_000966_040 Hb_000208_270--Hb_000966_040 Hb_000208_270--Hb_002814_010 Hb_001541_280 Hb_001541_280 Hb_002814_010--Hb_001541_280 Hb_004934_130 Hb_004934_130 Hb_002814_010--Hb_004934_130 Hb_000679_320 Hb_000679_320 Hb_002814_010--Hb_000679_320 Hb_002814_010--Hb_020141_030 Hb_000359_160 Hb_000359_160 Hb_002814_010--Hb_000359_160 Hb_001053_020 Hb_001053_020 Hb_001252_030--Hb_001053_020 Hb_001252_030--Hb_000103_230 Hb_003849_070 Hb_003849_070 Hb_001252_030--Hb_003849_070 Hb_001252_030--Hb_020141_030 Hb_005977_060 Hb_005977_060 Hb_001252_030--Hb_005977_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.6504 181.564 186.056 368.236 67.485 77.2108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4456 2.26018 2.03859 48.718 924.247

CAGE analysis